Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1247
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   224   8e-61
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   219   3e-59
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   152   4e-39
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    33   0.003
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   7.1  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  224 bits (547), Expect = 8e-61
 Identities = 111/145 (76%), Positives = 117/145 (80%)
 Frame = -1

Query: 744 QEAVPGAQCRFQRKERVRPRNCVVVMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYT 565
           QEAVPG    F  K  V  +      +    K  PPKGAADFTAQVIVLNHPGQISNGYT
Sbjct: 300 QEAVPGDNVGFNVKN-VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYT 358

Query: 564 PVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 385
           PVLDCHTAHIACKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEF
Sbjct: 359 PVLDCHTAHIACKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEF 418

Query: 384 PPLGRFAVRDMRQTVAVGVIKAVNF 310
           PPLGRFAVRDMRQTVAVGVIKAV F
Sbjct: 419 PPLGRFAVRDMRQTVAVGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  219 bits (534), Expect = 3e-59
 Identities = 107/144 (74%), Positives = 117/144 (81%)
 Frame = -1

Query: 741 EAVPGAQCRFQRKERVRPRNCVVVMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTP 562
           EA+PG    F  K  +  +      +    K  PP+GAADFTAQVIVLNHPGQISNGYTP
Sbjct: 301 EALPGDNVGFNVKN-ISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTP 359

Query: 561 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 382
           VLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFP
Sbjct: 360 VLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFP 419

Query: 381 PLGRFAVRDMRQTVAVGVIKAVNF 310
           PLGRFAVRDMRQTVAVGVIK+V F
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKSVTF 443


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  152 bits (368), Expect = 4e-39
 Identities = 76/109 (69%), Positives = 83/109 (76%)
 Frame = -1

Query: 741 EAVPGAQCRFQRKERVRPRNCVVVMLLVTPKTTPPKGAADFTAQVIVLNHPGQISNGYTP 562
           EA+PG    F  K  +  +      +    K  PP+GAADFTAQVIVLNHPGQISNGYTP
Sbjct: 12  EALPGDNVGFNVKN-ISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTP 70

Query: 561 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 415
           VLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 71  VLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -3

Query: 688 KELRRGYVAGDSKN 647
           KELRRGYVAGDSKN
Sbjct: 261 KELRRGYVAGDSKN 274



 Score = 26.6 bits (56), Expect = 0.25
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -2

Query: 722 NVGFNVKNVSVQ 687
           NVGFNVKNVSV+
Sbjct: 250 NVGFNVKNVSVK 261


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 203 KYRSCMKNCAVNSSSYFL 256
           K+  C+KN A   SSYF+
Sbjct: 94  KFYDCLKNSADTISSYFV 111


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 203 KYRSCMKNCAVNSSSYFL 256
           K+  C+KN A   SSYF+
Sbjct: 99  KFYDCLKNSADTISSYFV 116


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 203 KYRSCMKNCAVNSSSYFL 256
           K+  C+KN A   SSYF+
Sbjct: 99  KFYDCLKNSADTISSYFV 116


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 164 CSPFFLRNTFR*MKYRSCMKN 226
           C  FF R+  + ++YR C KN
Sbjct: 87  CKGFFRRSIQQKIQYRPCTKN 107


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = +1

Query: 616 CKICSTLRWGCFWSHQQHNHDAI 684
           C +   L W  FW H++   D +
Sbjct: 255 CVLIVVLSWVSFWIHREATSDRV 277


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 574 RLHTSLGLPHCPHC 533
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,631
Number of Sequences: 438
Number of extensions: 4062
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)