Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1246
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 171 9e-44
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 71 1e-13
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 44 2e-05
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 33 0.033
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 29 0.94
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 2.2
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 2.2
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.7
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 8.7
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 171 bits (416), Expect = 9e-44
Identities = 86/159 (54%), Positives = 107/159 (67%)
Frame = -2
Query: 614 VASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGS 435
++S +EL L+T R V TA T+LK+ LFRYQGHIGA LVLGG D GPH++ I HGS
Sbjct: 94 ISSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLVLGGYDCKGPHLFTIAAHGS 153
Query: 434 VDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVI 255
DKLPY +GSGSLAA++V E ++ D+ E +LV++AI AGIFNDLGSGSN DL VI
Sbjct: 154 SDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVI 213
Query: 254 RNTGPAQYLRTYEEANVKGKKQGSYRYALGTTAVLKQRV 138
Y R Y + N + KQ Y Y GTTAVLK+ +
Sbjct: 214 DEEKATPY-RGYSKPNERATKQSKYTYDRGTTAVLKEDI 251
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 705 KTAKKSXT*HPNMYCCGAGTAAXXEMXTPICCFXIGVAAL 586
K KK PN++C GAGTAA E T + I + +L
Sbjct: 64 KNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSL 103
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 71.3 bits (167), Expect = 1e-13
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = -2
Query: 602 LELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGPHIYCIYPHGSVDK 426
L + R+ G V TAATL M ++ + + A L++ G D +TG +Y I GS+ K
Sbjct: 87 LSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSAGLIVAGYDEKTGGDVYSIPLGGSLHK 146
Query: 425 LPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNT 246
P A GSGS +A ++ +M +EE + +++A+A + D SG + + ++
Sbjct: 147 QPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFLKNAVALAMERDGSSGGTIRMVILNKD 206
Query: 245 GPAQYLRTYEEAN 207
G + + AN
Sbjct: 207 GMERKFFAIDTAN 219
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 44.4 bits (100), Expect = 2e-05
Identities = 29/106 (27%), Positives = 47/106 (44%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 327
G AL++ G+D GP +Y P G+ + +GSGS A + + +DM EE + L
Sbjct: 139 GVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVL 198
Query: 326 VRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQ 189
+ + + L S NV L + G E A+ ++Q
Sbjct: 199 ILKVLRQVMEEKLDS-KNVQLAKVTAEGGFHIYNDEEMADAVAREQ 243
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 33.5 bits (73), Expect = 0.033
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 327
G +L++ G+D GP +Y + P G+ +G S AA E KR +E E
Sbjct: 131 GVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLE---KRYNDELELDDA 187
Query: 326 VRDAIAA--GIFNDLGSGSNVDLCVI 255
V AI A F + N+++ V+
Sbjct: 188 VHTAILALKETFEGELTEDNIEIAVV 213
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 372
G ++ G D +GPH+ P G V + +MGS S +A E
Sbjct: 129 GVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIE 173
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.5 bits (58), Expect = 2.2
Identities = 29/105 (27%), Positives = 44/105 (41%)
Frame = -2
Query: 557 TAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAV 378
T T+ K G G L++ ++R SV KLP T+ + A
Sbjct: 2346 TCVTVCKAFSIIVSGDAGGNLIIWDLNRAE-----FVSSLSVYKLPIQTIAVNARNAEIA 2400
Query: 377 FEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTG 243
F G+ + GK LV+D ++ I+N+ S N+ LC TG
Sbjct: 2401 FSTGFYCCVVNVNGKILVKDKLSR-IYNE-NSDENI-LCSCFYTG 2442
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.5 bits (58), Expect = 2.2
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +3
Query: 102 WAYQNRFY--LERYYTLLKHSSCTKSISIRTLLFPLHISFFISS*ILGRASVTNNAQVNV 275
WA+ N++ L+RY +LLK+++ + + +R + + + + AS TN+
Sbjct: 1525 WAHWNQYQAILKRYVSLLKNNAIDQKVVVRLITAVVSALRPLDDAV---ASYTNSEMNIE 1581
Query: 276 RT*TQVIEYTSSNSI-SDKLFSFFLIHITFPTCFKHCHSRKRS 401
+ Q + ++S+ S++ F+ L + FPT + H R S
Sbjct: 1582 QFDGQKKKCVLASSLPSEERFTEVLTNDFFPTLMLYLHIRDES 1624
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 221 YEEANVKGKKQGSYRYALGTTAVLKQRVIPLEVESILVRP 102
YE NV+ K+ +Y++ V+ ++I E SIL P
Sbjct: 334 YETINVEETKKETYKFTRSIKTVIPNKLISNESISILSIP 373
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 450 NAVNMRTGSVNTSQNQSSPYMALIAK*HSFQQCGSSF 560
N + M+ S+ T + + +PY L+A + CGS +
Sbjct: 861 NIIPMQKPSLTTHETKQNPYDLLVALDSDRKACGSLY 897
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,738
Number of Sequences: 5004
Number of extensions: 55645
Number of successful extensions: 125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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