Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1246
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 182 4e-46
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 59 3e-09
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 59 3e-09
06_01_0387 - 2770387-2770514,2770963-2771063,2771152-2771255,277... 57 2e-08
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 40 0.002
01_06_1091 + 34464923-34465026,34465124-34465163,34465245-344653... 38 0.006
02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856 38 0.009
02_05_0057 + 25472872-25472912,25473012-25473157,25474008-254740... 37 0.015
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 37 0.020
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 34 0.10
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 31 1.3
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127... 29 3.9
08_01_0827 + 8016704-8017150 29 3.9
01_01_0117 + 864966-865686,866860-866883,867006-868063 28 6.9
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 28 9.1
03_04_0176 - 18123895-18123996,18124169-18124289,18124381-18124430 28 9.1
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 182 bits (442), Expect = 4e-46
Identities = 91/164 (55%), Positives = 114/164 (69%), Gaps = 1/164 (0%)
Frame = -2
Query: 614 VASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGS 435
V+SQL+L R TGR V T+ TLLK LF YQGH+ AALVLGGVD TGPH++ +YPHGS
Sbjct: 97 VSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGS 156
Query: 434 VDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVI 255
D LP+ATMGSGSLAAM+VFE+ +K + EEG +LV +AI GIFNDLGSGSNVD+CVI
Sbjct: 157 TDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCVI 216
Query: 254 RNTGPAQYLRTYEEANVKG-KKQGSYRYALGTTAVLKQRVIPLE 126
G +YLR ++ N + Y + G T VL ++ L+
Sbjct: 217 -TKGKTEYLRNHQLPNPRTYVSSKGYNFTKGQTVVLSTKITQLK 259
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -1
Query: 675 PNMYCCGAGTAAXXEMXT 622
PN+YCCGAGTAA E T
Sbjct: 77 PNIYCCGAGTAADTEAVT 94
Score = 33.1 bits (72), Expect = 0.24
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -3
Query: 748 GADPRAXEXTVVSAKNCXKIXYLA 677
GAD RA E +V+ KNC KI Y+A
Sbjct: 53 GADTRATEGPIVADKNCEKIHYMA 76
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = -2
Query: 602 LELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHIYCIYPHGSVDK 426
L + G+ V+ AA L++ + ++ + + A +++GG D+ G I+ + G++ +
Sbjct: 88 LHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILR 147
Query: 425 LPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNT 246
P+A GSGS + + WK M++EE +K V ++ I D SG V I
Sbjct: 148 QPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINAD 207
Query: 245 G 243
G
Sbjct: 208 G 208
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Frame = -2
Query: 602 LELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDR-TGPHIYCIYPHGSVDK 426
L + G+ V+ AA L++ + ++ + + A +++GG D+ G I+ + G++ +
Sbjct: 88 LHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILR 147
Query: 425 LPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNT 246
P+A GSGS + + WK M++EE +K V ++ I D SG V I
Sbjct: 148 QPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINAD 207
Query: 245 G 243
G
Sbjct: 208 G 208
>06_01_0387 -
2770387-2770514,2770963-2771063,2771152-2771255,
2771345-2771507,2771550-2771596,2772818-2772946
Length = 223
Score = 56.8 bits (131), Expect = 2e-08
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = -2
Query: 611 ASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPHIYCIYPHGS 435
A Q L L R + + A+ LL +L+ Y+G + ++ G D GP +Y + G+
Sbjct: 66 AFQCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVDSEGA 125
Query: 434 VDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDL 264
++GSGSL A + + G++ M EE +L R AI F D SG V +
Sbjct: 126 RLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGCVSV 182
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRD 354
G ++LGG DR GP +Y I P G K A +G G AA G ++D
Sbjct: 133 GCGVILGGYDRDGPQLYMIEPSGLSYKYFGAALGKGRQAAKTCVYDGSRKD 183
>01_06_1091 +
34464923-34465026,34465124-34465163,34465245-34465328,
34465457-34465480,34465582-34465655,34465726-34465812,
34465922-34466006,34466215-34466261,34467048-34467113,
34468307-34468397,34468477-34468548
Length = 257
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 372
G ++LGG DR GP +Y I P G K A +G G AA E
Sbjct: 141 GCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIE 185
>02_01_0268 + 1784781-1785056,1787314-1787394,1787395-1787856
Length = 272
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 327
G L++ G+D +G H+Y P G+ + +GS S AA E ++ N+ ++L
Sbjct: 131 GVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFE-GYNDYTPEQL 189
Query: 326 VRDAIAA 306
++DA++A
Sbjct: 190 IKDALSA 196
>02_05_0057 +
25472872-25472912,25473012-25473157,25474008-25474072,
25474182-25474228,25474922-25474997,25475176-25475243,
25475862-25475931,25476178-25476263,25476418-25476480,
25476556-25476621,25476740-25476788
Length = 258
Score = 37.1 bits (82), Expect = 0.015
Identities = 22/86 (25%), Positives = 38/86 (44%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 327
G +L++ G D GP +Y + P GS + MG A E + DM ++
Sbjct: 154 GVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHT 213
Query: 326 VRDAIAAGIFNDLGSGSNVDLCVIRN 249
+ G + S +N+++ VIR+
Sbjct: 214 AILTLKEGYEGQI-SANNIEIGVIRS 238
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 36.7 bits (81), Expect = 0.020
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 327
G +L++ G D GP +Y + P GS + MG A E + DM ++
Sbjct: 191 GVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHT 250
Query: 326 VRDAIAAGIFNDLGSGSNVDLCVIRN 249
+ G + S +N+++ +IR+
Sbjct: 251 AILTLKEGYEGQI-SANNIEIGIIRS 275
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 34.3 bits (75), Expect = 0.10
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Frame = -2
Query: 500 ALVLGGVDRTGP-----HIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEG 336
+LV+GGV + GP ++ + G+ + + G G+ A+ + W+ DM EE
Sbjct: 470 SLVIGGVKK-GPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEWREDMTFEEA 528
Query: 335 KKLVRDAIAAGIFNDLGSGSNVDLCVIRNTG----PAQYLRTY 219
KLV + ++ D S + + I G P L+TY
Sbjct: 529 VKLVEKCLLVLLYRDRSSINKFQIAKITTEGATIYPPYSLKTY 571
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNE--EEGK 333
G +L++ G D GP +Y P G+ + +GSGS A + + + + + E K
Sbjct: 149 GVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKSLTVFIYEKK 208
Query: 332 KLVRDAI 312
+ + +AI
Sbjct: 209 RNIENAI 215
>12_02_0814 -
23410278-23411854,23411933-23412166,23412688-23412725,
23412872-23412948
Length = 641
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Frame = -1
Query: 345 GRRKKACP---RCYCCWY 301
G +K ACP RCY CWY
Sbjct: 139 GHQKSACPGSTRCYNCWY 156
>08_01_0827 + 8016704-8017150
Length = 148
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 469 PVLSTPPKTRAAPIWP**RNSIRFSSVAAVSTGTVRPVCKRCNSNXEATDW 621
P+L +PP R + R + RF A S +C+ C+S + W
Sbjct: 11 PLLPSPPPPRRQEVGAAVRLTTRFPMTTAPSGSATSALCRSCSSAAAPSPW 61
>01_01_0117 + 864966-865686,866860-866883,867006-868063
Length = 600
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 119 ILPREVLHAA*AQQLYQEHIYTN---LAFSPSH*LLHKFLDIGQ 241
IL VL + +Y H+ N L S H LLHKF+ + Q
Sbjct: 76 ILDHPVLGSCKVTMIYYRHVIMNAIPLVDSSPHCLLHKFISVNQ 119
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 541 SSVAAVSTGTVRPVCKRCNS 600
S V +V+T T+RP+C RC +
Sbjct: 79 SPVESVTTATLRPICFRCTN 98
>03_04_0176 - 18123895-18123996,18124169-18124289,18124381-18124430
Length = 90
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 539 KRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPH 441
K++ F +G L G DRT ++ IYPH
Sbjct: 56 KKVHFVAWNCLGTELASGSTDRTNSRVWRIYPH 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,587,112
Number of Sequences: 37544
Number of extensions: 374141
Number of successful extensions: 790
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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