Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1246
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 109 2e-24
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 57 1e-08
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 35 0.071
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 33 0.16
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 31 1.2
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 30 2.0
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 30 2.0
U00035-4|AAA50646.2| 482|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical p... 28 8.1
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 109 bits (263), Expect = 2e-24
Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Frame = -2
Query: 614 VASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRTGPHIYCIYPHGS 435
++ L L L+TGR V TA K+ LF YQG+IGA L++GGVD TGPH+Y +G+
Sbjct: 105 LSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYLLIGGVDPTGPHLYMCSANGT 164
Query: 434 VDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVI 255
P+ GSGS AA+ + E +K DM ++E +KLV+ A+ AG+ D SG++++L +I
Sbjct: 165 TMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQRALEAGMHGDNASGNSLNLVII 224
Query: 254 RNTGPAQYLRTYEEANVKGKKQG-SYRYALGTTAVLKQRVIPLEV 123
+ E + + Y++ G T VLK + +V
Sbjct: 225 EPSETVFKGPIVPEFCKRPEPNDLVYKFQAGATKVLKHKTYKYDV 269
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 63.3 bits (147), Expect = 2e-10
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = -2
Query: 614 VASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPHIYCIYPHG 438
VA L L ++ V A+ L+ Y+G + ++ G D+ GP I+ + G
Sbjct: 130 VAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQIFKVDSEG 189
Query: 437 SVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCV 258
+L ++GSGSL A + + +K M ++E +KL AI + D GSG +LC
Sbjct: 190 DRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSGGVCNLCH 249
Query: 257 IRNT 246
I T
Sbjct: 250 ITPT 253
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Frame = -2
Query: 602 LELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVDRT-GPHIYCIYPHGSVDK 426
+++ + + V + ++ + ++ L+ Y+ + A++++ G D G +Y I G V +
Sbjct: 86 IDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQVYAIPIGGFVSR 145
Query: 425 LPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNT 246
GSGS ++ W+ ++ EE K +V+ A+ F D SG V L VI
Sbjct: 146 QRSTASGSGSTFVQGFLDSQWRPNLTLEECKAIVKQAVGLATFRDGSSGGVVRLAVINKA 205
Query: 245 G 243
G
Sbjct: 206 G 206
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 34.7 bits (76), Expect = 0.071
Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = -2
Query: 596 LQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGPHIYCIYPHGSVDK- 426
L L R + + + ++ + + R+ + LV G D P+I C+ G V
Sbjct: 73 LYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIGCVSAP 132
Query: 425 LPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAIAAGIFNDLGSG 279
+ +G+G + V E W+ +M +E + +I + + D SG
Sbjct: 133 RDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASG 181
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/91 (24%), Positives = 45/91 (49%)
Frame = -2
Query: 506 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKL 327
G A++ GVD+ G ++ + P G+ ++G+ S A + + + +EG K+
Sbjct: 137 GVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKM 196
Query: 326 VRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQ 234
AI + + + +NV++ VI+ T A+
Sbjct: 197 AL-AILKQVMEEKLNSANVEVVVIKPTVDAK 226
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Frame = -2
Query: 602 LELQRLHTGRTVPVETAATLLKRML---FRYQGHIGAALVLGGVDRTGPHIYC---IYPH 441
L+L + G V A ++R + R Q H +++GG D + Y
Sbjct: 68 LQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYLA 127
Query: 440 GSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEEGKKLVRDAI 312
+ + PY G A+ + +K+DM E EG L+ I
Sbjct: 128 NGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCI 170
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
protein F57F4.4 protein.
Length = 2090
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 174 CSWYNCCA*AACNTSRGRIYFGTPNRSISAYGCGASNESLNVNN 43
C Y+ CA ++ G+ Y + + Y C ASN + NVNN
Sbjct: 367 CMPYDVCAGFGLASTEGQTYNPPQDEELEVYCCSASN-NCNVNN 409
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 174 CSWYNCCA*AACNTSRGRIYFGTPNRSISAYGCGASNESLNVNN 43
C Y+ CA ++ G+ Y + + Y C ASN + NVNN
Sbjct: 367 CMPYDVCAGFGLASTEGQTYNPPQDEELEVYCCSASN-NCNVNN 409
>U00035-4|AAA50646.2| 482|Caenorhabditis elegans Hypothetical
protein R01H2.4 protein.
Length = 482
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Frame = -2
Query: 479 DRTGPHIYCIYPHGSVDKLPYATMGSGSLAAM---AVFEAGWKRDMNEEEGKKLVRDAI- 312
+ T P + PH P + + +A M ++F AG D+ V DA+
Sbjct: 309 NNTSPKMSIYLPHWKTKDFPSSRISQHLVATMNLNSLFVAGGFGDL-------AVEDAVP 361
Query: 311 -AAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYR 177
A G + + L RN+ YLRT EE + GKK R
Sbjct: 362 SATGDPKKVSHLQHFGLLSFRNSPKKTYLRTPEEKTLLGKKSRQSR 407
>Z82271-6|CAB05213.1| 1091|Caenorhabditis elegans Hypothetical protein
F54E12.2 protein.
Length = 1091
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = -2
Query: 347 EEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYAL 168
E+ G +++ ++AAG +G N + V + PA + ++ G+K+ + + L
Sbjct: 982 EKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRL 1041
Query: 167 GTTAVLKQRVIPLEVESI 114
T ++QRV+ L+ + +
Sbjct: 1042 VTKGTIEQRVVMLQKDKV 1059
>Z73102-19|CAA97421.1| 1091|Caenorhabditis elegans Hypothetical
protein F54E12.2 protein.
Length = 1091
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = -2
Query: 347 EEEGKKLVRDAIAAGIFNDLGSGSNVDLCVIRNTGPAQYLRTYEEANVKGKKQGSYRYAL 168
E+ G +++ ++AAG +G N + V + PA + ++ G+K+ + + L
Sbjct: 982 EKGGARVMLLSLAAGGVGLNLTGGNHLVMVDLHWNPALEQQAFDRIYRMGQKKDVFIHRL 1041
Query: 167 GTTAVLKQRVIPLEVESI 114
T ++QRV+ L+ + +
Sbjct: 1042 VTKGTIEQRVVMLQKDKV 1059
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,825,240
Number of Sequences: 27780
Number of extensions: 318860
Number of successful extensions: 774
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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