Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1245
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0648 - 19694538-19696569,19697151-19697998                       28   9.1  

>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
 Frame = +3

Query: 141 FLXVHP-SHLPRLVSKRNFITKLTLXX*PQARTXANRIQVGXTFDRGSTLQPRLPDTXDX 317
           +L +H  + +PR + K   +  L L         A+ +Q+          Q RLPD    
Sbjct: 613 YLCIHSFTKVPRQIGKLQLLQTLDLTNSKVTELPASIVQLRQLVSLELGFQARLPDGISN 672

Query: 318 MSTSTHXSAYFRTKEKDGFILYLGN 392
           M    +   +  +K     +L LGN
Sbjct: 673 MRALQYLRCFNCSKNSINVVLELGN 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,281
Number of Sequences: 37544
Number of extensions: 301685
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)