Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1245
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens ... 34 0.63
AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 32 1.9
AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens ... 32 1.9
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 31 3.3
X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of lamini... 31 5.8
X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of lamini... 31 5.8
X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin... 31 5.8
L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit... 31 5.8
AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice ... 31 5.8
AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice ... 31 5.8
AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice ... 31 5.8
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 31 5.8
AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain ... 31 5.8
AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain ... 31 5.8
AK126537-1|BAC86582.1| 467|Homo sapiens protein ( Homo sapiens ... 30 7.7
AK124073-1|BAC85767.1| 536|Homo sapiens protein ( Homo sapiens ... 30 7.7
AK097452-1|BAC05058.1| 225|Homo sapiens protein ( Homo sapiens ... 30 7.7
>AK128083-1|BAC87264.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ46204 fis, clone TESTI4009501. ).
Length = 225
Score = 33.9 bits (74), Expect = 0.63
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 453 HY*QHNNDLYHITAYNKLITHS*VHXLNITGTI*H--TNSHSLRNTRTS*KHTLTHVTHS 626
H H + YH +THS H +T TI H T++H+ +T TS +TH+
Sbjct: 137 HAHTHAHSHYHTRTLT--LTHSHAHSCTLTSTITHMHTHTHTHMHTHTSTLTRTLTLTHT 194
Query: 627 QHFNTISNISH 659
+S +SH
Sbjct: 195 HMHTFLSLVSH 205
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 493 HTINL*RTHEYTH*I*PALYNTQTHTHFVTRAHHKNTHSHM*RTHNTST 639
HT L +H +TH A + TH H TRAH + H+H ++T T
Sbjct: 106 HTRILTLSHMHTH----AHTHAHTHGHTHTRAHSTHAHTHAHSHYHTRT 150
>AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ45585 fis, clone BRTHA3013882. ).
Length = 201
Score = 32.3 bits (70), Expect = 1.9
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -3
Query: 658 CEILEIVLKCCECV-TCVSVCFYDVRVLRSECEFVCYIVPVIFSXCTHECVISLLYAVIW 482
C + + L C CV CVSVCF V V C VC V V C CV L +
Sbjct: 104 CLCVCVCLHLCVCVGLCVSVCFC-VSVCVCLCVCVCICVFVCVWVCVCLCVCVCLCVCLC 162
Query: 481 YKSLLC 464
LC
Sbjct: 163 LCVFLC 168
Score = 31.5 bits (68), Expect = 3.3
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = -3
Query: 628 CECVTCVSVCFYDVRVLRSECEFVCYIVPVIFSXCTHECV 509
C CV CVSVC V C +C V V C H CV
Sbjct: 51 CLCV-CVSVCLCVCLVSVCLCVCLCVCVSVCLCVCLHLCV 89
>AK095631-1|BAC04594.1| 134|Homo sapiens protein ( Homo sapiens
cDNA FLJ38312 fis, clone FCBBF3021506. ).
Length = 134
Score = 32.3 bits (70), Expect = 1.9
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -3
Query: 622 CVTCVSVCFYDVRVLRSECEFVCYIVPVIFSXCTHECVISLLYAVIWYKSLLC 464
CV CV VC + V C FV + V C CV +Y ++ LC
Sbjct: 40 CVICVCVCVF-VCAHMCSCVFVYVCICVCLYVCVFVCVCMYVYLCVFVCMCLC 91
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 31.5 bits (68), Expect = 3.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 628 CECVTC--VSVCFYDVRVLRSECEFVCYIVPVIFSXCTHECVISLLYAVIWYKSLLCC** 455
C+CV+C VSVC Y + V C VC + V C CV + I +C
Sbjct: 5 CDCVSCVSVSVCLY-LYVCVCICVSVCVCICVSVCVCICVCVSVFVCVCICVCVCVCVSM 63
Query: 454 CKNIMI 437
C +I +
Sbjct: 64 CVSISV 69
Score = 31.1 bits (67), Expect = 4.4
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 658 CEILEIVLKCCECV-TCVSVCFYDVRVLRSECEFVCYIVPVIFSXCTHECVISLLYAVIW 482
C + + + C CV CVS+C + V C VC V V S C + CV + +
Sbjct: 44 CVSVFVCVCICVCVCVCVSMCV-SISVCVYLCLCVCVSVCVYVSVCMYLCVFLCVCVYVS 102
Query: 481 YKSLLC 464
LC
Sbjct: 103 VSVCLC 108
>X85108-1|CAA59429.1| 1331|Homo sapiens alpha3b subunit of laminin 5
protein.
Length = 1331
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 852 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 911
Query: 384 LGN 392
LGN
Sbjct: 912 LGN 914
>X85107-1|CAA59428.1| 1238|Homo sapiens alpha3a subunit of laminin 5
protein.
Length = 1238
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 759 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 818
Query: 384 LGN 392
LGN
Sbjct: 819 LGN 821
>X84900-1|CAA59325.1| 1806|Homo sapiens alpha 3B chain of laminin-5
protein.
Length = 1806
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 852 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 911
Query: 384 LGN 392
LGN
Sbjct: 912 LGN 914
>L34155-1|AAA59483.1| 1713|Homo sapiens epiligrin alpha 3 subunit
protein.
Length = 1713
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 759 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 818
Query: 384 LGN 392
LGN
Sbjct: 819 LGN 821
>AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice
variant b2 protein.
Length = 3277
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 2323 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 2382
Query: 384 LGN 392
LGN
Sbjct: 2383 LGN 2385
>AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice
variant b1 protein.
Length = 3333
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 2379 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 2438
Query: 384 LGN 392
LGN
Sbjct: 2439 LGN 2441
>AY327114-1|AAQ72569.1| 1668|Homo sapiens laminin alpha 3 splice
variant a protein.
Length = 1668
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 714 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 773
Query: 384 LGN 392
LGN
Sbjct: 774 LGN 776
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 30.7 bits (66), Expect = 5.8
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 514 THEYTH*I*PALY-NTQTHTHFV-TRAH---HKNTHSHM*RTHNTSTQFLIFHT 660
TH +TH + LY T THTH V T A+ H +TH+H TH S L HT
Sbjct: 81 THTHTHAV---LYLPTHTHTHAVLTLAYLPIHTHTHTH---THTLSCTSLYTHT 128
>AB208853-1|BAD92090.1| 1408|Homo sapiens Laminin alpha 3b chain
variant protein.
Length = 1408
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 454 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 513
Query: 384 LGN 392
LGN
Sbjct: 514 LGN 516
>AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain
protein.
Length = 3333
Score = 30.7 bits (66), Expect = 5.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Frame = +3
Query: 225 QARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFR---TKEKDG----FILY 383
QAR A+++ V F+ S ++ RLP+ + + T S + + ++E G F++Y
Sbjct: 2379 QARDAASKVAVPMRFNGKSGVEVRLPNDLEDLKGYTSLSLFLQRPNSRENGGTENMFVMY 2438
Query: 384 LGN 392
LGN
Sbjct: 2439 LGN 2441
>AK126537-1|BAC86582.1| 467|Homo sapiens protein ( Homo sapiens
cDNA FLJ44573 fis, clone UTERU3016789, moderately
similar to SH3 domain-binding protein 3BP-2. ).
Length = 467
Score = 30.3 bits (65), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 642 LC*SVVSALHV*VCV-FMMCACYEVSVSLCVI*CRLYLVXVLMS 514
+C S +HV VC +C C VS+++C C+ V + +S
Sbjct: 41 VCLSAYPCVHVCVCQRIRVCMCVSVSLTMCACVCQCIRVCICVS 84
>AK124073-1|BAC85767.1| 536|Homo sapiens protein ( Homo sapiens
cDNA FLJ42079 fis, clone SYNOV2021320, highly similar
to SH3 DOMAIN-BINDING PROTEIN 3BP-2. ).
Length = 536
Score = 30.3 bits (65), Expect = 7.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 642 LC*SVVSALHV*VCV-FMMCACYEVSVSLCVI*CRLYLVXVLMS 514
+C S +HV VC +C C VS+++C C+ V + +S
Sbjct: 41 VCLSAYPCVHVCVCQRIRVCMCVSVSLTMCACVCQCIRVCICVS 84
>AK097452-1|BAC05058.1| 225|Homo sapiens protein ( Homo sapiens
cDNA FLJ40133 fis, clone TESTI2012231. ).
Length = 225
Score = 30.3 bits (65), Expect = 7.7
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 510 THS*VHXLNITGTI*HTNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYR 665
TH+ +H +IT + +S ++ NT T HT T TH H ++I+ Y+
Sbjct: 9 THT-IHTQHITYHSHNPHSPTIHNTHTHHSHTHTIWTHHTHTTHTTHINSYK 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,344,527
Number of Sequences: 237096
Number of extensions: 1751515
Number of successful extensions: 2044
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2003
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -