Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1245
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chai...    56   4e-08
M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chai...    56   4e-08
L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A prot...    56   4e-08
AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-P...    56   4e-08
Z98254-2|CAB10912.1|  582|Drosophila melanogaster EG:114E2.2 pro...    29   5.1  
AE014298-548|AAF45888.2|  595|Drosophila melanogaster CG13316-PB...    29   5.1  

>M96388-1|AAA28662.1| 3712|Drosophila melanogaster laminin A chain
            protein.
          Length = 3712

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +3

Query: 228  ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGNPKGTM 407
            AR  AN I+VG  F   + L+ + P+    ++T T+ S YFRT E  GF+LYLGN   T 
Sbjct: 2664 ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 2723

Query: 408  LRXTKSXCLKII 443
             +      ++I+
Sbjct: 2724 QKNNDFVAVEIV 2735


>M75882-1|AAA28661.1| 1951|Drosophila melanogaster laminin A chain
            protein.
          Length = 1951

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +3

Query: 228  ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGNPKGTM 407
            AR  AN I+VG  F   + L+ + P+    ++T T+ S YFRT E  GF+LYLGN   T 
Sbjct: 903  ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 962

Query: 408  LRXTKSXCLKII 443
             +      ++I+
Sbjct: 963  QKNNDFVAVEIV 974


>L07288-1|AAC37178.1| 3712|Drosophila melanogaster laminin A protein.
          Length = 3712

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +3

Query: 228  ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGNPKGTM 407
            AR  AN I+VG  F   + L+ + P+    ++T T+ S YFRT E  GF+LYLGN   T 
Sbjct: 2664 ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 2723

Query: 408  LRXTKSXCLKII 443
             +      ++I+
Sbjct: 2724 QKNNDFVAVEIV 2735


>AE014296-1101|AAF50672.2| 3712|Drosophila melanogaster CG10236-PA
            protein.
          Length = 3712

 Score = 56.4 bits (130), Expect = 4e-08
 Identities = 27/72 (37%), Positives = 40/72 (55%)
 Frame = +3

Query: 228  ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGNPKGTM 407
            AR  AN I+VG  F   + L+ + P+    ++T T+ S YFRT E  GF+LYLGN   T 
Sbjct: 2664 ARQLANSIKVGVNFKPSTILELKTPEKTKLLATRTNLSTYFRTTEPSGFLLYLGNDNKTA 2723

Query: 408  LRXTKSXCLKII 443
             +      ++I+
Sbjct: 2724 QKNNDFVAVEIV 2735


>Z98254-2|CAB10912.1|  582|Drosophila melanogaster EG:114E2.2
           protein.
          Length = 582

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 558 TNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLRRLXGG 689
           T S+SL N   + +    H  H QH N +    HY ++R   GG
Sbjct: 154 TRSYSLSNVSAA-RDQQDHPQHQQHANHMQIQQHYGYMRSNIGG 196


>AE014298-548|AAF45888.2|  595|Drosophila melanogaster CG13316-PB,
           isoform B protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 558 TNSHSLRNTRTS*KHTLTHVTHSQHFNTISNISHYRFLRRLXGG 689
           T S+SL N   + +    H  H QH N +    HY ++R   GG
Sbjct: 154 TRSYSLSNVSAA-RDQQDHPQHQQHANHMQIQQHYGYMRSNIGG 196


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,557,765
Number of Sequences: 53049
Number of extensions: 559606
Number of successful extensions: 1070
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)