Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1245
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 46 2e-05
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 46 2e-05
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 46 2e-05
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 46 2e-05
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 31 1.2
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 6.2
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 6.2
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 6.2
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 6.2
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 6.2
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 6.2
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 228 ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGN 392
AR ANRI++G F++GS+L +P + S YFRT+++ G L+ GN
Sbjct: 2683 ARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 228 ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGN 392
AR ANRI++G F++GS+L +P + S YFRT+++ G L+ GN
Sbjct: 2683 ARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 228 ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGN 392
AR ANRI++G F++GS+L +P + S YFRT+++ G L+ GN
Sbjct: 497 ARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 551
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 228 ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGN 392
AR ANRI++G F++GS+L +P + S YFRT+++ G L+ GN
Sbjct: 2683 ARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 228 ARTXANRIQVGXTFDRGSTLQPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGN 392
AR ANRI++G F++GS+L +P + S YFRT+++ G L+ GN
Sbjct: 2683 ARDAANRIKLGAHFEKGSSLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 288 QPRLPDTXDXMSTSTHXSAYFRTKEKDGFILYLGNPKGTM 407
QPR P+ +STSTH + YF + G I +LGN G++
Sbjct: 304 QPRDPNNLRLLSTSTHPTIYFTGIQPTG-IPHLGNFFGSI 342
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 553 YIVPVIFSXCTHECVISLLYAVIWYKSLL 467
YI+ ++ C EC+ S LY + +Y L
Sbjct: 653 YIMATVYGFCKGECIPSFLYTLSYYMCYL 681
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 553 YIVPVIFSXCTHECVISLLYAVIWYKSLL 467
YI+ ++ C EC+ S LY + +Y L
Sbjct: 622 YIMATVYGFCKGECIPSFLYTLSYYMCYL 650
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 553 YIVPVIFSXCTHECVISLLYAVIWYKSLL 467
YI+ ++ C EC+ S LY + +Y L
Sbjct: 562 YIMATVYGFCKGECIPSFLYTLSYYMCYL 590
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 553 YIVPVIFSXCTHECVISLLYAVIWYKSLL 467
YI+ ++ C EC+ S LY + +Y L
Sbjct: 562 YIMATVYGFCKGECIPSFLYTLSYYMCYL 590
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 553 YIVPVIFSXCTHECVISLLYAVIWYKSLL 467
YI+ ++ C EC+ S LY + +Y L
Sbjct: 653 YIMATVYGFCKGECIPSFLYTLSYYMCYL 681
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 553 YIVPVIFSXCTHECVISLLYAVIWYKSLL 467
YI+ ++ C EC+ S LY + +Y L
Sbjct: 622 YIMATVYGFCKGECIPSFLYTLSYYMCYL 650
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,636,684
Number of Sequences: 27780
Number of extensions: 280175
Number of successful extensions: 516
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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