Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1243
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.1  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    27   2.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   4.5  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   6.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 321  PKPDIGL--AIPPNIFPGEVFPKAGVPPNTLP 410
            PKP +G+    PP+  P    P AG+PP  +P
Sbjct: 1201 PKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = -3

Query: 698 AGIRHEASARLSPAKP----SVAPKQTSPPSVAPKISLQFSDLRQQQAAPGFGSPA 543
           A   HE S  L    P    S++P +++  S  P +      L    AAP   SP+
Sbjct: 74  ASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQLNSPS 129


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 698 AGIRHEASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAPGFGSPAA 540
           A +   A  R S   PS  P  + PPS+ P +  Q       Q AP F +P A
Sbjct: 226 ASVNAAAIVRKSAVTPSSDPYNSPPPSI-PLLGSQ----TNLQLAPSFAAPQA 273


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 665 SPAKPSVAPKQTSPPSVAP 609
           SP+K + +PK+ +P +VAP
Sbjct: 70  SPSKKATSPKKATPAAVAP 88


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -1

Query: 376 NTSPGKMFGGMASPISG---FGXTQSNSTFENLAT 281
           NT+   MFG   S   G   FG TQ+N+   N  T
Sbjct: 521 NTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGT 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,412
Number of Sequences: 5004
Number of extensions: 42609
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)