Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1243
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 33 0.22
11_06_0610 - 25449085-25453284 29 3.5
05_04_0035 + 17378541-17381276 29 4.7
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138... 29 4.7
11_04_0183 + 14642037-14642069,14642099-14642220,14642791-146429... 28 6.2
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 28 8.2
05_01_0435 - 3453312-3453527,3455227-3455360,3455544-3455738,345... 28 8.2
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 28 8.2
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = -1
Query: 391 TPAFGNTSPGKMFGGMASPISGFGXTQSNSTFENLATQNTLTFGNLAXXXXXXXXXQAPS 212
TPAFG+TSP +FG ++P G S+ T +T FG + A S
Sbjct: 71 TPAFGSTSP-SLFGATSAPAFGSSGFGSSGT-PAFGASSTPGFG-ASSSASFGTSTSAFS 127
Query: 211 FNTSPSF 191
F +SPSF
Sbjct: 128 FGSSPSF 134
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 686 HEASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAP 561
HE SPAK + P++ SPPS P+ S S+ + +P
Sbjct: 928 HEEYVPPSPAKSTPPPEEKSPPSHTPESSSPPSEESEPPPSP 969
>05_04_0035 + 17378541-17381276
Length = 911
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 681 GFSSPQSGQ-AFGGTQTDFAPIGSAENKPSVFGSP 580
GF++PQ Q ++GG Q+ +GS + + FG+P
Sbjct: 758 GFNAPQVQQPSYGGPQSSQHAVGSTQPPQAQFGAP 792
>02_01_0206 +
1388149-1388330,1388527-1388629,1388896-1388964,
1389684-1389803,1390352-1390482,1390840-1390881,
1390961-1391138,1391241-1391319,1391441-1391610,
1392503-1392629,1392731-1392846,1392926-1393033,
1393118-1393180,1393283-1393456,1393814-1393978
Length = 608
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 696 RNSARGFSSPQSGQAFGGTQTD--FAPIGSAENKPSVFGSPATASGS 562
R RG+SS G + GGT++ A SA P G P TAS S
Sbjct: 8 RRRRRGWSSGTRGTSRGGTRSGGCSATASSATPSPPPTGPPVTASPS 54
>11_04_0183 +
14642037-14642069,14642099-14642220,14642791-14642974,
14643148-14643348
Length = 179
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = +3
Query: 540 GSRATKAGSRLLLPEIRKLKAYFRRYRWGRSLFGCHRRLGRTEAS*SLVPNS 695
G RAT AGSRL P + Y +FGC RLG L P S
Sbjct: 83 GPRATSAGSRLPDPATSPTASPPIAYLLLHPIFGCLYRLGSNRIRQLLAPLS 134
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = -3
Query: 680 ASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAPGFGSPAAIRF*ANIRSV 510
A A +P +VA + T PP+ A +I S Q AA PAA A R V
Sbjct: 104 APAASTPGPVAVAARSTPPPTPAVQIPAVASSSSAQPAAAAQPPPAAAAVSALARDV 160
>05_01_0435 -
3453312-3453527,3455227-3455360,3455544-3455738,
3455774-3455929,3456300-3456327,3456374-3456637,
3456728-3456868,3457482-3457602,3457886-3458049
Length = 472
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 169 VLREKRNLPIKRK*GSSFSXICNSK 95
VL E + LP+++K GSS S NSK
Sbjct: 300 VLNETQTLPVEKKAGSSCSHALNSK 324
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 391 TPAFGNTSPGKMFGGMASPISGF 323
TPAFG G +GG +SP GF
Sbjct: 443 TPAFGKILAGWDYGGSSSPTIGF 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,577,685
Number of Sequences: 37544
Number of extensions: 328895
Number of successful extensions: 1243
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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