Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1243
(700 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X64228-1|CAA45535.1| 2090|Homo sapiens putative oncogene protein. 34 0.42
BC105998-1|AAI05999.1| 2080|Homo sapiens NUP214 protein protein. 34 0.42
BC045620-1|AAH45620.2| 2090|Homo sapiens nucleoporin 214kDa prot... 34 0.42
AL157938-9|CAI41111.1| 2090|Homo sapiens nucleoporin 214kDa prot... 34 0.42
AL157938-8|CAI41109.1| 1684|Homo sapiens nucleoporin 214kDa prot... 34 0.42
AB159230-1|BAD07398.1| 2091|Homo sapiens KIAA0023 splice variant... 34 0.42
AJ291712-2|CAC32840.1| 532|Homo sapiens ring finger protein 29 ... 33 1.3
AJ243489-1|CAC43020.1| 548|Homo sapiens RING finger protein 29 ... 33 1.3
AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant pr... 32 1.7
U04811-1|AAA79334.2| 749|Homo sapiens trophinin protein. 30 9.1
AL049732-7|CAB86651.2| 1431|Homo sapiens trophinin protein. 30 9.1
AL049732-6|CAM26848.1| 1034|Homo sapiens trophinin protein. 30 9.1
AB029037-1|BAA83066.3| 1458|Homo sapiens KIAA1114 protein protein. 30 9.1
>X64228-1|CAA45535.1| 2090|Homo sapiens putative oncogene protein.
Length = 2090
Score = 34.3 bits (75), Expect = 0.42
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%)
Frame = -1
Query: 388 PAFGN----TSP-----GKMFG-GMASPISG---FGXTQSNSTFENLATQNTLTFGNLA 251
PAFG+ TSP GK+FG G A+ +G FG + + ++F LA+QN TFG+L+
Sbjct: 1992 PAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLS 2050
>BC105998-1|AAI05999.1| 2080|Homo sapiens NUP214 protein protein.
Length = 2080
Score = 34.3 bits (75), Expect = 0.42
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%)
Frame = -1
Query: 388 PAFGN----TSP-----GKMFG-GMASPISG---FGXTQSNSTFENLATQNTLTFGNLA 251
PAFG+ TSP GK+FG G A+ +G FG + + ++F LA+QN TFG+L+
Sbjct: 1982 PAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLS 2040
>BC045620-1|AAH45620.2| 2090|Homo sapiens nucleoporin 214kDa protein.
Length = 2090
Score = 34.3 bits (75), Expect = 0.42
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%)
Frame = -1
Query: 388 PAFGN----TSP-----GKMFG-GMASPISG---FGXTQSNSTFENLATQNTLTFGNLA 251
PAFG+ TSP GK+FG G A+ +G FG + + ++F LA+QN TFG+L+
Sbjct: 1992 PAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLS 2050
>AL157938-9|CAI41111.1| 2090|Homo sapiens nucleoporin 214kDa protein.
Length = 2090
Score = 34.3 bits (75), Expect = 0.42
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%)
Frame = -1
Query: 388 PAFGN----TSP-----GKMFG-GMASPISG---FGXTQSNSTFENLATQNTLTFGNLA 251
PAFG+ TSP GK+FG G A+ +G FG + + ++F LA+QN TFG+L+
Sbjct: 1992 PAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLS 2050
>AL157938-8|CAI41109.1| 1684|Homo sapiens nucleoporin 214kDa protein.
Length = 1684
Score = 34.3 bits (75), Expect = 0.42
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%)
Frame = -1
Query: 388 PAFGN----TSP-----GKMFG-GMASPISG---FGXTQSNSTFENLATQNTLTFGNLA 251
PAFG+ TSP GK+FG G A+ +G FG + + ++F LA+QN TFG+L+
Sbjct: 1586 PAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLS 1644
>AB159230-1|BAD07398.1| 2091|Homo sapiens KIAA0023 splice variant 1
protein.
Length = 2091
Score = 34.3 bits (75), Expect = 0.42
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 13/59 (22%)
Frame = -1
Query: 388 PAFGN----TSP-----GKMFG-GMASPISG---FGXTQSNSTFENLATQNTLTFGNLA 251
PAFG+ TSP GK+FG G A+ +G FG + + ++F LA+QN TFG+L+
Sbjct: 1993 PAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFGSSSNTTSFGTLASQNAPTFGSLS 2051
>AJ291712-2|CAC32840.1| 532|Homo sapiens ring finger protein 29
protein.
Length = 532
Score = 32.7 bits (71), Expect = 1.3
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -3
Query: 683 EASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAPGFGSPAAIRF*ANIRSVCW 504
E +A + + +V+ K+TS P+ +I + L+ Q AAP GS A +I S W
Sbjct: 467 EVAAAAASERAAVSGKETSAPAATSQIGFEAPPLQGQAAAPASGSGADSEPARHIFSFSW 526
>AJ243489-1|CAC43020.1| 548|Homo sapiens RING finger protein 29
protein.
Length = 548
Score = 32.7 bits (71), Expect = 1.3
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -3
Query: 683 EASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAPGFGSPAAIRF*ANIRSVCW 504
E +A + + +V+ K+TS P+ +I + L+ Q AAP GS A +I S W
Sbjct: 483 EVAAAAASERAAVSGKETSAPAATSQIGFEAPPLQGQAAAPASGSGADSEPARHIFSFSW 542
>AB209373-1|BAD92610.1| 410|Homo sapiens CS0DA006YC23 variant
protein.
Length = 410
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 315 VXPKPDIGLAIPPNIFPGEVFPKAGVPPNTLPXP 416
V P P GL +PP +P P G PP P P
Sbjct: 360 VPPHPPPGLGLPPASYPPPAVPPGGQPPVPPPIP 393
>U04811-1|AAA79334.2| 749|Homo sapiens trophinin protein.
Length = 749
Score = 29.9 bits (64), Expect = 9.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 388 PAFGNT-SPGKMFGGMASPISGFGXTQSNSTFENLATQNTLTFG 260
P FG S FGG S + FG T SNS A +++FG
Sbjct: 415 PGFGGAFSTSAGFGGALSTAADFGGTPSNSIGFGAAPSTSVSFG 458
>AL049732-7|CAB86651.2| 1431|Homo sapiens trophinin protein.
Length = 1431
Score = 29.9 bits (64), Expect = 9.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 388 PAFGNT-SPGKMFGGMASPISGFGXTQSNSTFENLATQNTLTFG 260
P FG S FGG S + FG T SNS A +++FG
Sbjct: 1097 PGFGGAFSTSAGFGGALSTAADFGGTPSNSIGFGAAPSTSVSFG 1140
>AL049732-6|CAM26848.1| 1034|Homo sapiens trophinin protein.
Length = 1034
Score = 29.9 bits (64), Expect = 9.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 388 PAFGNT-SPGKMFGGMASPISGFGXTQSNSTFENLATQNTLTFG 260
P FG S FGG S + FG T SNS A +++FG
Sbjct: 700 PGFGGAFSTSAGFGGALSTAADFGGTPSNSIGFGAAPSTSVSFG 743
>AB029037-1|BAA83066.3| 1458|Homo sapiens KIAA1114 protein protein.
Length = 1458
Score = 29.9 bits (64), Expect = 9.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 388 PAFGNT-SPGKMFGGMASPISGFGXTQSNSTFENLATQNTLTFG 260
P FG S FGG S + FG T SNS A +++FG
Sbjct: 1124 PGFGGAFSTSAGFGGALSTAADFGGTPSNSIGFGAAPSTSVSFG 1167
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,988,888
Number of Sequences: 237096
Number of extensions: 1691767
Number of successful extensions: 5707
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5697
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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