Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1243
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm recept...    29   3.2  
Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z92849-5|CAB07430.1|  163|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81556-4|CAB04526.1|  223|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical ...    28   5.6  
AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    28   7.4  
U29379-1|AAF99982.2|  319|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U50309-2|AAG24136.2|  334|Caenorhabditis elegans Seven tm receptor
           protein 146 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 261 PNVRVFCVAKFSKVEFDCVXPK 326
           P + +FC+ +F K  F C+ PK
Sbjct: 294 PLIAIFCIREFKKAVFCCIQPK 315


>Z77662-15|CAI79240.1|  255|Caenorhabditis elegans Hypothetical
           protein F47B8.14 protein.
          Length = 255

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 683 EASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAPGFGSPAA 540
           E +A  +PA+P+  P     P  AP  + + + +  Q AAP   +PAA
Sbjct: 179 EGAAPAAPAEPAPVPAPEPAPEAAPAPAPEAAPVPAQDAAP--AAPAA 224


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 680 ASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAPG 558
           +S    PAKPS+  K+    +++ KISL   DL++    PG
Sbjct: 593 SSEPAKPAKPSITKKEPPSETMSAKISL-IGDLQKSFRLPG 632


>Z92849-5|CAB07430.1|  163|Caenorhabditis elegans Hypothetical
           protein H12D21.6 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 693 NSARGFSSPQSGQAFGGTQTDFAPIGSAENKPSVFGSPATASGS 562
           +S+ G  S  S   FG  ++  + +GS   + S FG    +SGS
Sbjct: 79  SSSNGMGSSNSQGGFGNQESQSSGMGSNNQRQSGFGGQMGSSGS 122


>Z81556-4|CAB04526.1|  223|Caenorhabditis elegans Hypothetical
           protein F58G1.4 protein.
          Length = 223

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 126 PYFRLMGRFRFSRSTLXPRQPVNDGDVLKL 215
           P FRL G F+  +  +   +P+ D D L+L
Sbjct: 62  PQFRLPGHFKLHKGFITVNEPITDEDSLEL 91


>AL110499-2|CAB57913.1|  297|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1b protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 695 GIRHEASARLSPAKPSVAPKQTSPPSVAPKISLQFS 588
           GIR + +  ++PA PS AP  T+P S  P  S   S
Sbjct: 208 GIRSQRT--MAPAPPSSAPMTTAPSSTGPSSSQPIS 241


>AL110499-1|CAB57912.1|  325|Caenorhabditis elegans Hypothetical
           protein Y62F5A.1a protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 695 GIRHEASARLSPAKPSVAPKQTSPPSVAPKISLQFS 588
           GIR + +  ++PA PS AP  T+P S  P  S   S
Sbjct: 208 GIRSQRT--MAPAPPSSAPMTTAPSSTGPSSSQPIS 241


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 698 AGIRHEASARLSPAKPSVAPKQTSPPSVA-PKISLQFSDLRQQQAAP 561
           A +  +ASA +  A P   P+QT P   A PK ++Q +  R   A P
Sbjct: 281 APVVQQASAPVQQAPPKPVPQQTPPVQQAPPKPAVQQAPTRAAPAPP 327


>U29379-1|AAF99982.2|  319|Caenorhabditis elegans Hypothetical
           protein K05B2.2a protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 683 EASARLSPAKPSVAPKQTSPPSVAPKISLQFSDLRQQQAAPGFGSPAAI 537
           + S  L PAKP   PKQTS  S+   +  + S   QQQ   G  S +++
Sbjct: 91  DESVPLEPAKPYFHPKQTSTSSMVTSLPGR-SAAGQQQLENGQRSTSSL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,477,444
Number of Sequences: 27780
Number of extensions: 255882
Number of successful extensions: 805
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)