Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1241
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1466 + 37559600-37559795,37560597-37560730,37561252-375614...    32   0.56 
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960...    29   3.9  
03_03_0120 - 14608688-14608936,14609249-14609638                       28   6.9  
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102...    28   9.1  

>01_06_1466 +
           37559600-37559795,37560597-37560730,37561252-37561437,
           37562538-37562753,37563008-37563119,37563493-37563663,
           37564621-37564684,37565555-37565685,37566263-37566393,
           37566843-37566945,37567322-37567398,37567813-37567860,
           37568162-37568311,37568810-37569010
          Length = 639

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 164 SLRHLGMPRCLSRRHTAPCGAALSHLFLRRCAPLLFQCELTL 289
           S RH G     S   T+ C     H+F+R  +  L +C+LTL
Sbjct: 61  SSRHPGFGHSKSTTATSDCSKGQEHVFVRSYSDRLLKCDLTL 102


>03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,
            9608898-9609275,9609380-9609658,9610044-9610168,
            9610269-9610335,9610582-9612006
          Length = 1062

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 717  ISXWLLMKLKMNFXYHTIVMNKTFETERFFIVPEHFS 607
            ++ WLL+ + ++F  H +++   F  + F IVP  F+
Sbjct: 986  VNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFN 1022


>03_03_0120 - 14608688-14608936,14609249-14609638
          Length = 212

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 447 GWIIRNSILVRISHCIIASIIKYCIQRCYFASLQSLKXQT 328
           GW   + ++  +S C +  + KY +  C F S+Q L   T
Sbjct: 124 GW---HGVMRVVSQCYMEHVFKYKVNHCQFKSMQGLSLIT 160


>05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,
            1022753-1023031,1023402-1023779,1024079-1024188,
            1024394-1024622,1024725-1025303
          Length = 1055

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 717  ISXWLLMKLKMNFXYHTIVMNKTFETERFFIVP 619
            ++ WLL+ + ++F  H +++   F  + F IVP
Sbjct: 978  VNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVP 1010


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,124
Number of Sequences: 37544
Number of extensions: 281802
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)