Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1241
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily ass...    31   1.2  
U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical pr...    30   2.0  

>U00045-3|AAL02502.1|  868|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 204, isoform b protein.
          Length = 868

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 340 EVSDNASLFGLLPIESAKGQFTLKEQRRAAP*EQVTERGAARRS 209
           E SD   +   LP+ES   +  + +QR+AAP      RG A  S
Sbjct: 657 EYSDGEEVTEKLPVESRDWRDVINQQRQAAPGNSADRRGIAATS 700


>U40059-5|AAA81140.1|  191|Caenorhabditis elegans Hypothetical
           protein K03C7.3 protein.
          Length = 191

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 194 LSRRHTAPCGAALSHLFLRRCAPLLFQCEL 283
           +S+RH AP G      FLR C   LF  E+
Sbjct: 116 VSKRHLAPLGIYFRFFFLRHCFAFLFFTEM 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,559,994
Number of Sequences: 27780
Number of extensions: 255777
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)