Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1241
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.0  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    23   4.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 451 EDISNDSISLITSTKHVEINQINEFTSPQPDL 546
           +DI N    + +S+  +  ++ N+F  P+P L
Sbjct: 362 QDILNLRTDISSSSSSISSSEENDFWQPKPTL 393


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 111 KLCGNKYGGFGFMYHS-XGC 55
           ++CG+K  GF +  HS  GC
Sbjct: 10  RVCGDKASGFHYGVHSCEGC 29


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 111 KLCGNKYGGFGFMYHS-XGC 55
           ++CG+K  GF +  HS  GC
Sbjct: 68  RVCGDKASGFHYGVHSCEGC 87


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 231 SVTCSYGAARRCSFSVN*PLADSMGNNPNNDALSXTSMTASLRSNNAVCN 380
           +V   Y   RR   SV     + +G NPN  A     + +  ++ NAV N
Sbjct: 553 AVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTINAVVN 602


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 430 VADYPTSEDISNDSISLITSTKHVEINQINEFTSPQPDLIN 552
           +A YP      N++ S ITS   +EI+  +        LIN
Sbjct: 102 LAPYPDWTWAKNENCSGITSAYKIEIDMCDRLWVLDSGLIN 142


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 231 SVTCSYGAARRCSFSVN*PLADSMGNNPNNDALSXTSMTASLRSNNAVCN 380
           +V   Y   RR   SV     + +G NPN  A     + +  ++ NAV N
Sbjct: 521 AVLDQYPLMRRTMESVAAERLNKIGKNPNLVAHREEDLGSESKTINAVVN 570


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 291 ADSMGNNPNNDALSXTSMTASLRSNN 368
           +D+  NN +ND    +S + +  +NN
Sbjct: 438 SDNQNNNQHNDQAHHSSKSNNRHNNN 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,123
Number of Sequences: 438
Number of extensions: 3467
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)