Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1239
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   4.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 393 CNDLNFQRHKSVRGACKS*GIKKKVLLS 476
           CN+ + + HK V  AC S    +K+LLS
Sbjct: 42  CNEASLKAHKVVLSACSS--YFQKLLLS 67


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 305 IFFGSIKNAIFKNSINTIVFEYIYYLFTVLQ*FEFSKTQICPRSMQ 442
           +FF + K   F N I   V+  I+   +VL     S T  CP +++
Sbjct: 120 LFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLK 165


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 305 IFFGSIKNAIFKNSINTIVFEYIYYLFTVLQ*FEFSKTQICPRSMQ 442
           +FF + K   F N I   V+  I+   +VL     S T  CP +++
Sbjct: 120 LFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLK 165


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 372 IYSKTIVFIEFLKIAFLIEPKKIIVKRSTR 283
           +  KTI+  EF   AFL+ PK  I  + T+
Sbjct: 469 VCEKTIIPYEFDPGAFLLSPKDGIYLKITK 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,227
Number of Sequences: 438
Number of extensions: 3542
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)