Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1237
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   200   1e-52
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   2e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    54   2e-08
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.6  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   8.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  200 bits (489), Expect = 1e-52
 Identities = 97/210 (46%), Positives = 131/210 (62%), Gaps = 1/210 (0%)
 Frame = -1

Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKYXXXXXXX 514
           DLSRFV+WP+YIR+QR++ +L  R KVP  I QF +TLDK T   +FK+L KY       
Sbjct: 45  DLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAE 104

Query: 513 XXXXXXXXXXXXXXXXXXXXXKR-PNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVL 337
                                 + P  ++ G N V  L+E KKA+LV+IA DVDPIELV+
Sbjct: 105 KKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVV 164

Query: 336 FLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 157
           FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+T V   D+   + +V A+  NF+ 
Sbjct: 165 FLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSA 224

Query: 156 RYEELRKHWGGGVLGNKSNARIAKLEKDKA 67
           +Y+E R+ WGGG++G K+ A +AK  K  A
Sbjct: 225 KYDESRRKWGGGIMGGKTQALLAKRAKAAA 254



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 739 RPKXFAIGQGIQPXRGLVQICK 674
           RP+ F IGQ IQP R L +  K
Sbjct: 30  RPRSFGIGQDIQPKRDLSRFVK 51


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = -1

Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 268
           +R G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 33/100 (33%), Positives = 47/100 (47%)
 Frame = -1

Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 256
           I  G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   +
Sbjct: 54  ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113

Query: 255 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 136
            K  T   +  V  G +   SKV E     + E YEE+ K
Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 414  LCLCRIGWC 440
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 432 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 310
           +SG+  +T+ +      +V I + +D +E    LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,248
Number of Sequences: 5004
Number of extensions: 41701
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)