Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1237
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 244 6e-65
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 183 1e-46
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 58 1e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 45 6e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 35 0.081
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 31 1.00
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06) 29 4.0
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 29 5.3
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 28 7.0
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 7.0
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 9.3
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 244 bits (597), Expect = 6e-65
Identities = 114/212 (53%), Positives = 148/212 (69%)
Frame = -1
Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKYXXXXXXX 514
DLSRFVRWP+Y+++QRQK++L +R KVP INQFTQ LD+ + LFK+L KY
Sbjct: 50 DLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAE 109
Query: 513 XXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLF 334
K+P ++ G N +T LVE KKAQLVVIAHDVDPIE+V++
Sbjct: 110 KKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVW 169
Query: 333 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 154
LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KTN+NER
Sbjct: 170 LPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNER 229
Query: 153 YEELRKHWGGGVLGNKSNARIAKLEKDKAREL 58
++E+RKHWGGG++G KS A AK+EK K REL
Sbjct: 230 FDEIRKHWGGGIMGPKSLAATAKVEKAKLREL 261
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 745 EKRPKXFAIGQGIQPXRGL 689
EKRP+ F IG IQP R L
Sbjct: 33 EKRPRNFGIGGDIQPKRDL 51
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 183 bits (446), Expect = 1e-46
Identities = 87/167 (52%), Positives = 112/167 (67%)
Frame = -1
Query: 558 LFKILEKYXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQL 379
LFK+L KY K+P ++ G N +T LVE KKAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 378 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 199
VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123
Query: 198 FSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKDKAREL 58
+ ++E++KTN+NER++E+RKHWGGG++G KS A AK+EK K REL
Sbjct: 124 LNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLREL 170
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 57.6 bits (133), Expect = 1e-08
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -1
Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 262
+R G N TK + + A+ +V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153
Query: 261 VHRKTCTCLALTNVESGDRASFSKVVEAIK 172
V R C N S + + AI+
Sbjct: 154 VTRPVIACAVTVNEGSQLKPQIQTLQNAIE 183
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 447 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 280
+ T+R G V K + K + V++A DV PI+++ +P +C +PY V K
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 34.7 bits (76), Expect = 0.081
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 426 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 268
G + K ++K++A L +++++ D V + ALC + G+P V +LG
Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/62 (25%), Positives = 34/62 (54%)
Frame = -1
Query: 327 ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 148
A C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y
Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263
Query: 147 EL 142
++
Sbjct: 1264 DI 1265
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 291 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 142
VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137
>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -1
Query: 300 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 142
+ +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388
>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
Length = 1160
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 26 KLYSAQPCFCANSRALSFSSLAMRALDLLPRTPPPQCLRSSS 151
+L S PCFCANS S A+ + L +TP Q + +SS
Sbjct: 575 QLVSTSPCFCANS---SNCQHALSSSRQLVKTPSRQLVNASS 613
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 234 LSMCMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQW 353
L C+ C +Q H G + MVRP+ G EPA W
Sbjct: 1187 LLACLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMW 1228
>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
Length = 189
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 116 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 223
R + +RS S RSL L ST+ EKEA+ D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 191 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 292
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 687 SRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEK 538
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 347 SWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAHA*L*QMWSL 213
+WF V+W YH + +S S+++YT L ++WS+
Sbjct: 2891 TWFKPSSTCRVRWFYH--MMGSSMGSLNVYTRTSMSGPLSRVWSV 2933
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,905,186
Number of Sequences: 59808
Number of extensions: 341803
Number of successful extensions: 1138
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -