Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1237
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   277   2e-76
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   1.4  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              25   1.9  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    24   4.4  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   5.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            24   5.8  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  277 bits (680), Expect = 2e-76
 Identities = 128/215 (59%), Positives = 161/215 (74%)
 Frame = -1

Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKYXXXXXXX 514
           DLSRFV+WPKYIRIQR +A+LQ+R K+P PINQFTQTLDK T + + K  +KY       
Sbjct: 56  DLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLDKPTAQQVMKCWKKYRPENPIA 115

Query: 513 XXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLF 334
                                KR N +R G N+V K+VE+KKAQLV+IAHDVDPIELV++
Sbjct: 116 RVQRLKAKAEAKAAGKEEPPSKRANQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVY 175

Query: 333 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 154
           LPALCRKMGVPYCI+KGK+RLG LV+RKTCTC+ALT  E+ D+ + +K+VE IKTNFN+R
Sbjct: 176 LPALCRKMGVPYCIIKGKARLGTLVYRKTCTCVALTQFENADKPNLAKLVETIKTNFNDR 235

Query: 153 YEELRKHWGGGVLGNKSNARIAKLEKDKARELAQK 49
           ++++R+HWGGG+LG KS AR+AKLEK K RE+ QK
Sbjct: 236 FDDIRRHWGGGLLGPKSMARLAKLEKAKKREMLQK 270



 Score = 28.3 bits (60), Expect = 0.27
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 745 EKRPKXFAIGQGIQPXRGLVQICK 674
           EKR K + IGQ +QP R L +  K
Sbjct: 39  EKRVKNYGIGQNVQPKRDLSRFVK 62


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -3

Query: 439  HHPIRHKHSHQAGREEEGAACGHRS*C*SH*AGSLPASVMP*NGRTILHCQGQVPPRCT 263
            HH + H H H  G   EG   G  +   S  AG L A V P     I + + Q P + T
Sbjct: 1315 HHHLHHGHHHHHG--GEGVPMGPANAAPSSPAGVLVAKVPPVAVEDIENSKQQPPVQQT 1371


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 237 SMCMSCGVQVHRGGTC 284
           ++C+ CG + H+ GTC
Sbjct: 572 NVCIRCGQEGHKAGTC 587


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 237 SMCMSCGVQVHRGGTC 284
           S+C+ CG   HR  +C
Sbjct: 311 SLCLHCGAADHRAASC 326


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 201  SFSKVVEAIKTNFNERYEELRKHWG 127
            +FS+ +     NF+  + EL++ WG
Sbjct: 1855 TFSRTIPFFGGNFSPEHTELQRTWG 1879


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 201  SFSKVVEAIKTNFNERYEELRKHWG 127
            +FS+ +     NF+  + EL++ WG
Sbjct: 1856 TFSRTIPFFGGNFSPEHTELQRTWG 1880


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,445
Number of Sequences: 2352
Number of extensions: 12234
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)