Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1237
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 231 4e-61
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 219 1e-57
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 75 7e-14
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 63 2e-10
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 8e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 9e-06
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 3.5
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 231 bits (565), Expect = 4e-61
Identities = 106/214 (49%), Positives = 147/214 (68%)
Frame = -1
Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKYXXXXXXX 514
D++RFV+WPKYIR+QRQ A+LQ+R KVP INQF LD + + FK+L+KY
Sbjct: 51 DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEA 110
Query: 513 XXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLF 334
KRPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL
Sbjct: 111 KKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLH 170
Query: 333 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 154
LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + NF+ER
Sbjct: 171 LPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 230
Query: 153 YEELRKHWGGGVLGNKSNARIAKLEKDKARELAQ 52
+EE+RKHWGGGV+ KS+A+ K+E+ +AR+L +
Sbjct: 231 HEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 264
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 219 bits (536), Expect = 1e-57
Identities = 105/214 (49%), Positives = 146/214 (68%)
Frame = -1
Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKYXXXXXXX 514
D++RFV+WPKYIR+QRQ A+LQ+R KVP INQF LD + + FK+L+KY
Sbjct: 51 DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEV 110
Query: 513 XXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLF 334
RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL
Sbjct: 111 TK--------------------RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLH 150
Query: 333 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 154
LPALCRK VPY I+KGK+ LG +V RKT +AL +V D+++ +K+VE + NF+ER
Sbjct: 151 LPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSER 210
Query: 153 YEELRKHWGGGVLGNKSNARIAKLEKDKARELAQ 52
+EE+RKHWGGGV+ KS+A+ K+E+ +AR+L +
Sbjct: 211 HEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 244
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 74.5 bits (175), Expect = 7e-14
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -1
Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKY 535
D++RFV+WPKYIR+QRQ A+LQ+R KVP INQF LD + + FK+L+KY
Sbjct: 154 DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKY 206
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = -1
Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLD 577
D++RFV+WPKYIR+QRQ A+LQ+R KVP INQF LD
Sbjct: 154 DVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -1
Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 262
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 261 VHRKTCTCLALTNVESGDRASFSKVVEAIK 172
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -1
Query: 438 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 259
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 258 HRKTCTCLALTNVESGDRASFSKVVEAIK 172
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 92 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 241
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 92 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 241
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 92 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 241
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 92 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 241
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 92 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 241
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,725,991
Number of Sequences: 27780
Number of extensions: 252346
Number of successful extensions: 839
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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