Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1237
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 242 2e-64
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 238 2e-63
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 1e-07
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 2e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.029
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.029
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.050
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.050
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.050
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 31 0.62
At4g26580.1 68417.m03832 zinc finger (C3HC4-type RING finger) fa... 31 0.82
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 4.4
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 242 bits (592), Expect = 2e-64
Identities = 116/215 (53%), Positives = 150/215 (69%)
Frame = -1
Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKYXXXXXXX 514
DLSR+++WPK IR+QRQK +L++R KVP +NQFT+TLDK LFK+L KY
Sbjct: 42 DLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAA 101
Query: 513 XXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLF 334
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++
Sbjct: 102 KKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVW 160
Query: 333 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 154
LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+ FSK++EAIK NFN++
Sbjct: 161 LPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDK 220
Query: 153 YEELRKHWGGGVLGNKSNARIAKLEKDKARELAQK 49
YEE RK WGGG++G+KS A+ E+ A+E AQ+
Sbjct: 221 YEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQR 255
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 238 bits (583), Expect = 2e-63
Identities = 116/215 (53%), Positives = 148/215 (68%)
Frame = -1
Query: 693 DLSRFVRWPKYIRIQRQKAVLQRRXKVPXPINQFTQTLDKTTVKGLFKILEKYXXXXXXX 514
DLSR+++WPK IR+QRQK +L++R KVP +NQFT+TLDK LFKIL KY
Sbjct: 41 DLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAA 100
Query: 513 XXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLF 334
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++
Sbjct: 101 KKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVW 159
Query: 333 LPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNER 154
LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V++ D+ FSK++EAIK NFN++
Sbjct: 160 LPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDK 219
Query: 153 YEELRKHWGGGVLGNKSNARIAKLEKDKARELAQK 49
YEE RK WGGG++G+KS A+ E+ A+E AQ+
Sbjct: 220 YEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQR 254
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/100 (26%), Positives = 51/100 (51%)
Frame = -1
Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 256
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 255 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 136
K TC L ++ ++ + +KT++ + +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -1
Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 262
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 261 VHRKTCTCLALTNVESGDRASFSKVVEAIK 172
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -1
Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 262
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 261 VHRKTCTCLALTNVESGDRASFSKVVEAIK 172
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -1
Query: 435 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 262
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 261 VHRKTCTCLALTNVESGDRASFSKVVEAIK 172
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -1
Query: 417 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 244
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 243 TCLALTNVESGDRASFSKVVEAIK 172
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -1
Query: 426 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 268
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -1
Query: 426 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 268
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 426 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 268
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 426 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 268
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.050
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 426 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 268
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 171 TNFNERYEELRKHWGGGVLGNKSNARIAKLEKDKA 67
T R E+++ WGG LGN ++KLE++KA
Sbjct: 780 TRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKA 814
>At4g26580.1 68417.m03832 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 464
Score = 31.1 bits (67), Expect = 0.82
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +2
Query: 11 FFLNLKLYSAQPCFCANS--RALSFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMAS 184
FFL+LKLYS C C+ + LS S ++ R L + SSS S +
Sbjct: 103 FFLHLKLYSVSLCSCSGDQIKDLSVSDMSTRYSSQLQSSAINSITVSSS-SSFASTQLDD 161
Query: 185 TTFEKEARSPDSTFVRAKHVHVLR 256
T SP S+F + V R
Sbjct: 162 NTHTAPESSPSSSFFMRLAMRVSR 185
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 292 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 128
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,434
Number of Sequences: 28952
Number of extensions: 240547
Number of successful extensions: 799
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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