Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1236
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    26   6.6  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   8.7  
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    25   8.7  

>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 31  IYFII--TVEYKNKYKNYNVSALVHNSYNFPYYHNA 132
           IY I+  T  +K K ++   S ++++  +FP YH A
Sbjct: 372 IYEILYGTTPFKGKNRHATFSNILYSDVSFPEYHGA 407


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 741 LPPLCECTSRYFV 703
           LPP C+CTSR  V
Sbjct: 317 LPPYCDCTSRSLV 329


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 465 TAWNVLVICTVYLSXQYKIVNLN 533
           TA+N LV CT YL  + KI +L+
Sbjct: 138 TAYNSLVRCTTYLYAKGKIEDLS 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,845
Number of Sequences: 5004
Number of extensions: 50931
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)