Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1235
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    33   0.030
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    28   1.5  
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    26   6.0  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   6.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.9  

>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 262 PGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQIM*STIPPGAAGPYL 441
           P +     P+   T P    +PPS +I  PP  P+Q+    FPA    S  PP A G +L
Sbjct: 328 PAHLVQSAPVQRKTTPKIQRLPPS-SIQIPPPKPMQK----FPANAASSESPPNATGNFL 382


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 241 AVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQE 372
           A ++ Y     P P PIP+D + +   VP   TI   P   + E
Sbjct: 22  AAIKAYQYLISPPPSPIPNDKVASTVDVPKCSTIPESPKDSIVE 65


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 206 GKYIKRYNGRKLDAVMKNIKIF---HFNYFEKNN 114
           G+Y +RYNG  + A++   K+    H   F +NN
Sbjct: 63  GRYTERYNGGDVSAIVFRSKVVSRRHAQIFYENN 96


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 274 PLPQPIPHDTIPTWFHVPP 330
           P+P+PIP D +PT+  + P
Sbjct: 865 PIPEPIPVDAMPTFTVLVP 883


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +3

Query: 177 STVITFYIFSSLGVLLYPR*ECSDACVYTWVLSFTATDTP*YDSDLVPRTTFVDHQWPAT 356
           S   T+ ++S +   L P  + SD   Y W++      T  YD D + +   VD+++P  
Sbjct: 619 SNPTTWGLWSMIRGPLAPYQKFSDQNDYIWLIFTNENTTKTYDMDCMRQ---VDNKFPPY 675

Query: 357 ITTAGIHTSFSSANHVI 407
               G ++S S+  +++
Sbjct: 676 PALLGPYSSGSTVKNLL 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,405
Number of Sequences: 5004
Number of extensions: 66083
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)