Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1235
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 33 0.22
10_01_0160 - 1812213-1813790 30 1.5
07_03_1160 - 24430240-24431268 30 1.5
02_03_0306 - 17540258-17540610,17544063-17544128,17544266-175443... 30 2.0
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 29 2.7
01_06_1731 + 39516897-39517632,39517744-39517912,39517985-395184... 29 3.5
01_01_0082 + 625198-625719 29 4.7
06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615... 28 6.2
03_02_0775 - 11096620-11097240 28 6.2
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651... 28 8.2
01_06_0926 + 33075575-33076618 28 8.2
01_06_0685 - 31218716-31218873,31218974-31219266,31219366-312195... 28 8.2
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 250 RVYTPGYCPLPQPIPHDTIPTWF-HVPPSLTISGPPLSPLQESILAFP 390
R + G+ LP IP D WF VPP L PP SP SIL P
Sbjct: 76 RWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPASILLEP 123
>10_01_0160 - 1812213-1813790
Length = 525
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +3
Query: 336 DHQWPATITTAGIHTSFSSANHVIDYTARSSGAVFKSTFRVSPNRN*YFLKNRRLWTTLS 515
DH W + T I+ + DY A S A SP+ + + W +
Sbjct: 343 DHGWIEVLGTVSINIAKKKTAAAEDYEASESPAKRVRAMACSPSSVPDWDSDNHGWIDVL 402
Query: 516 QAAPSDDSG 542
A+P+DD+G
Sbjct: 403 SASPADDNG 411
>07_03_1160 - 24430240-24431268
Length = 342
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 259 TPGYCPLPQP-IPHDTIPTWFHVPPSLTISGPPLSPLQ 369
TPG PLP P +P P VPP GPP+ P+Q
Sbjct: 69 TPGVPPLPNPDVPPMNKPD---VPPMPKPDGPPIPPVQ 103
>02_03_0306 -
17540258-17540610,17544063-17544128,17544266-17544397,
17544530-17544685,17545216-17545375
Length = 288
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -3
Query: 455 SECRLKYGPAAPGGIVDHMICAGKASMDSCSGDSGGPLMVNEGGTWNQVGIVSWGIGCGK 276
S+CR++ P G+ G S + GD G V GG + VG WG C +
Sbjct: 221 SDCRIEE-PQLEEGLGIGATEEGLGSSERMVGDWGWGRWVPRGGIGSGVGDGRWGERCVR 279
Query: 275 GQYPG 261
G++ G
Sbjct: 280 GRWVG 284
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 29.5 bits (63), Expect = 2.7
Identities = 31/105 (29%), Positives = 37/105 (35%)
Frame = +1
Query: 217 FFCIQGRNAVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQ 396
F C+ G Y GY P P H P H P L+ P SP + S + F A
Sbjct: 136 FACLSGSGN----YGSGY---PPPHQHHMAPPPIHTPSRLSHDSPGGSPWR-SPMQFQAP 187
Query: 397 IM*STIPPGAAGPYLSLHSELVQIGIDTS*RTDGCGPLSRKLPHP 531
+ PP A P S HS G+ P PHP
Sbjct: 188 MSGYRGPPPGAPPPWSPHS-----GVPPPWNPHSAPPSQGLYPHP 227
>01_06_1731 +
39516897-39517632,39517744-39517912,39517985-39518488,
39518619-39518747,39519849-39519990,39520082-39520453
Length = 683
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 268 YCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFP 390
YCP P P P+ +P VPP G P+ PL ++ P
Sbjct: 45 YCPQPPPPPYQVMP----VPPPPPPVGLPVPPLPATMAPQP 81
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = +1
Query: 271 CPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQIM*ST---IPPGAAGPY 438
C P P D +PT + PP + PP SP +A+P ST PP G Y
Sbjct: 48 CTYASPPPPDVLPTPVYYPPPPPVYYPPPSP---PPVAYPPPTTPSTNCPPPPYGGGGY 103
>06_02_0369 -
15260013-15260273,15260367-15260516,15261518-15261577,
15262114-15262241,15262559-15262654,15262655-15263039
Length = 359
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = +3
Query: 21 KSLRILFXKQAKLAHFVVKIKYQFIEKSKRMVVFLKIIEVKYFNVFHNGIQFSTVITFYI 200
+ + ++F H V+K + + ++ + +KY H GI F T + +
Sbjct: 84 RDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQMLRALKYI---HTGINF-TFLKSHF 139
Query: 201 FSSLGVLLYPR*ECSDACVYTWVLSFTATDTP*YDSDLVPRTTFVDHQWPATITTAGI-H 377
+ V++ C+Y+++ +FT Y DL P+ + I G+
Sbjct: 140 LACASVVV---------CLYSYITTFTLNQANVYHRDLKPKNILANANCKLKICDFGLAR 190
Query: 378 TSFSSANHVIDYT 416
+F+ A + +T
Sbjct: 191 VAFTDAPTTVFWT 203
>03_02_0775 - 11096620-11097240
Length = 206
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = -3
Query: 419 GGIVDHMICAGKASMDSCSGDSGG--PLMVNEGGTWNQVGIVSWGIGCGK---GQYPGV 258
GG D + AG SG GG P+MV GG W + W CG+ GQ+ GV
Sbjct: 106 GGGGDAVAAAGDGDAGG-SGSRGGVAPVMVARGGAWRRGRRGPW--RCGRRHGGQFGGV 161
>03_05_0395 -
23763531-23764493,23764539-23764708,23764750-23765112,
23765298-23765508,23766214-23766381
Length = 624
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 384 FSSANHVIDYTARSSGAVFKSTFRVSPNRN 473
++ A +DY A G +F ST+RV+ +R+
Sbjct: 225 WADAESRLDYAAFGGGVIFDSTYRVNHHRS 254
>01_06_0926 + 33075575-33076618
Length = 347
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 419 GGIVDHMICAGKASMDSCSGDSGGPLMVN 333
GG+ D +C+G +D+ GDSGG V+
Sbjct: 144 GGVADP-VCSGGDGVDAACGDSGGARAVS 171
>01_06_0685 -
31218716-31218873,31218974-31219266,31219366-31219559,
31219666-31220409,31221504-31221824
Length = 569
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 590 RPICLPS--GGRAYAGXVATVIGWGSLRESGPQPSVLQEVSIPIWTNSECRLKYGP 429
RP+ P GGR G ++ W S+R+ + ++ + +P+W + L+ GP
Sbjct: 62 RPVDAPRRRGGRGGGGGGGELVAWKSVRQERWEGALEVDGELPLWLDG-TYLRNGP 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,262,730
Number of Sequences: 37544
Number of extensions: 462661
Number of successful extensions: 1328
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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