Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1235
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 99 2e-21
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 86 2e-17
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 82 4e-16
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 57 1e-08
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 45 6e-05
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 41 0.001
AF078157-11|AAG24070.1| 401|Caenorhabditis elegans Hypothetical... 34 0.085
U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical pr... 33 0.15
U13645-8|AAM15544.1| 565|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z75549-9|CAA99914.1| 357|Caenorhabditis elegans Hypothetical pr... 33 0.26
AY008124-1|AAG32077.1| 357|Caenorhabditis elegans heterotrimeri... 33 0.26
M38249-1|AAA28060.1| 357|Caenorhabditis elegans G protein alpha... 31 1.0
Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear recep... 30 1.8
AF039717-4|AAO21385.1| 303|Caenorhabditis elegans Abnormal daue... 29 4.2
AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal daue... 29 4.2
AF039717-2|AAK82918.1| 508|Caenorhabditis elegans Abnormal daue... 29 4.2
AF039717-1|AAK82919.1| 510|Caenorhabditis elegans Abnormal daue... 29 4.2
AF032112-1|AAC47803.1| 510|Caenorhabditis elegans DAF-16 protein. 29 4.2
AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork head-rel... 29 4.2
AF020343-1|AAB84391.1| 508|Caenorhabditis elegans fork head-rel... 29 4.2
AF020342-1|AAB84390.1| 510|Caenorhabditis elegans fork head-rel... 29 4.2
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical p... 28 7.4
U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 27 9.8
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 27 9.8
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 99 bits (238), Expect = 2e-21
Identities = 58/143 (40%), Positives = 74/143 (51%), Gaps = 4/143 (2%)
Frame = -3
Query: 641 DIAIXTLDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRE-SGPQPSVLQEVSIPI 465
D AI + PV + RPICLPS A + V GWGS E S L+E+ +P+
Sbjct: 145 DFAIMRIHPPVNTSTTARPICLPSLP-AVENRLCVVTGWGSTIEGSSLSAPTLREIHVPL 203
Query: 464 WTNSECRLKYGPAAPGGI-VDHMICAGKA--SMDSCSGDSGGPLMVNEGGTWNQVGIVSW 294
+ C P G I + M+CAG + +DSC GDSGGPLM G W G+VSW
Sbjct: 204 LSTLFCSSL--PNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDGHWELTGVVSW 261
Query: 293 GIGCGKGQYPGVYTRITAFLPWI 225
GIGC + PGVY + + WI
Sbjct: 262 GIGCARPGMPGVYGNVHSASTWI 284
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 86.2 bits (204), Expect = 2e-17
Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Frame = -3
Query: 644 NDIAIXTLDQP-VTFTKNIRPICLPSGGRAYA-GXVATVIGWGSLRESGPQPSVLQEVSI 471
+DIAI + P + F + +PICLPS Y G V GWGS+ + LQ I
Sbjct: 116 HDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSMGLRYAER--LQAALI 173
Query: 470 PIWTNSECRLKYGPAAPGGIVDHMICAG--KASMDSCSGDSGGPLMVN-EGGTWNQVGIV 300
PI +C + CAG + +DSC GDSGGP E G + G++
Sbjct: 174 PIINRFDC--VNSSQIYSSMSRSAFCAGYLEGGIDSCQGDSGGPFACRREDGAFVLAGVI 231
Query: 299 SWGIGCGKGQYPGVYTRITAFLPWI 225
SWG GC + + PG+YT + +L WI
Sbjct: 232 SWGDGCAQKKQPGIYTMVAPYLSWI 256
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 81.8 bits (193), Expect = 4e-16
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 19/176 (10%)
Frame = -3
Query: 692 IKRVVRHRGFDIRTLYNDIAIXTLDQPVTFTKNIRPICLPSGG----RAYAGXVATVIGW 525
+K H G++ +T NDIA+ + ++ I+P+CL + Y V VIG+
Sbjct: 107 VKEAYIHSGYNNQTADNDIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGV--VIGY 163
Query: 524 GSL--RESGPQPSV-----LQEVSIPIWTNSEC--RLKYGPAAPGGIVDHMICAGKASMD 372
G +S +P + LQ S+PI ++ +C ++ I + ICAG
Sbjct: 164 GLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHG 223
Query: 371 SCSGDSGGPLMVNEG-GTWNQVGIVSWGIG-----CGKGQYPGVYTRITAFLPWIQ 222
+ GDSGGPL++++ G + Q+GI S+G +G++PGVYTRI+ ++PWIQ
Sbjct: 224 TAPGDSGGPLLIHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQ 279
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 57.2 bits (132), Expect = 1e-08
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Frame = -3
Query: 644 NDIAIXTLDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSL-RESGPQPSVLQEVSIP 468
+D AI +++ + F++N+RPICLP Y +A V GWG + ESGP ++ E IP
Sbjct: 143 HDWAIVEVEKRIHFSENVRPICLPRPNMYYTKSLA-VPGWGRIFNESGP---LIHE--IP 196
Query: 467 IWTNSECRLKYGPAAPGGIVDHMICAGKASMD------SCSGDSGGPLMVNEG--GTWNQ 312
+ + +C+ + P D ICA ++ +C GDSGG L + G
Sbjct: 197 MRIDRDCKRPWSDRLPAD-ADDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFL 255
Query: 311 VGIVSWGI-GCGKGQYPGVYTRITAFL 234
+ I S+G GC +TR+ +L
Sbjct: 256 IAITSFGTRGCPSNML-ARFTRVDMYL 281
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 44.8 bits (101), Expect = 6e-05
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Frame = -3
Query: 644 NDIAIXTLDQPVTFTKNIRPICLP--SGGRAYAGXVATVIGWGSLRESGPQPS---VLQE 480
NDI I L+ + + CLP +G T GWGS G + ++Q
Sbjct: 176 NDIVILELESTIDDVEGANYACLPFLPEVNIQSGANVTSFGWGSDPGKGFDNAAFPMIQV 235
Query: 479 VSIPIWTNSECRLKYGPAAPGGIVDHMICAGKASMDSCSGDSGGPLMVNEGGTWNQ--VG 306
+++ T + C +G + P D A + + CSGDSGG L ++ + + +
Sbjct: 236 LTLATETLATCEENWGTSIP---FDSFCTAEEEDKNVCSGDSGGGLTFHQSDSAREFIIA 292
Query: 305 IVSWGIGC 282
IVS+G C
Sbjct: 293 IVSYGSDC 300
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 40.7 bits (91), Expect = 0.001
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 6/131 (4%)
Frame = -3
Query: 656 RTLYNDIAIXTLDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSVLQEV 477
R +NDIA+ L++P+ F+K+I P CLPS + +G R+ P SVL+
Sbjct: 117 RESFNDIAVFELEEPIEFSKDIFPACLPSAPKIPRIRETGYKLFGYGRD--PSDSVLESG 174
Query: 476 SIPIWTN--SECRLKYGPAAPGGIVDHMICAGKASMD-SCSGDSGGPLMVNEGGTWN--- 315
+ + +EC + GG+ C + SC GDSG +V T N
Sbjct: 175 KLKSLYSFVAECSDDF---PYGGV----YCTSAVNRGLSCDGDSGSG-VVRTSDTRNVQV 226
Query: 314 QVGIVSWGIGC 282
VG++S G+ C
Sbjct: 227 LVGVLSAGMPC 237
>AF078157-11|AAG24070.1| 401|Caenorhabditis elegans Hypothetical
protein F25E5.10 protein.
Length = 401
Score = 34.3 bits (75), Expect = 0.085
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Frame = -3
Query: 647 YNDIAIXTLDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSVLQEVSIP 468
+N +A+ L +PV +N RPIC S R Y G G+G R + + L+ I
Sbjct: 170 FNRVAVIELKKPVHKGQNARPICFGSDFRIYTGY--KFFGYGDNR-GAVKDATLRHTKI- 225
Query: 467 IWTNSECRLKYGPAAPGGIVDHMICAGKASMDSCSGDSGGPLMVNEGGTWNQVGI-VSWG 291
E K+ P+ + + C A C+GD GG + G+ G+ V
Sbjct: 226 ----KEVPCKH-PS------EDLFCV-TAENPLCNGDFGGAAVSKFHGSVRAYGVYVDGP 273
Query: 290 IGCGKGQYPGVYT 252
C K VYT
Sbjct: 274 YECNKANRRTVYT 286
>U13645-9|AAM15545.1| 597|Caenorhabditis elegans Hypothetical
protein C05D10.4b protein.
Length = 597
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = +3
Query: 321 RTTFVDHQWPATITTAGIHTSFSSA-----NHVIDYTA-RSSGAVFKSTFRVS-PNR 470
R ++ +WP T+ + IH SSA +H ID RSS A F S R S P+R
Sbjct: 43 REPMIEQRWPTTVRNSSIHPHVSSAHPSYRSHSIDAAVNRSSSACFHSPHRPSFPSR 99
>U13645-8|AAM15544.1| 565|Caenorhabditis elegans Hypothetical
protein C05D10.4a protein.
Length = 565
Score = 33.1 bits (72), Expect = 0.20
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Frame = +3
Query: 318 PRTTFVDHQWPATITTAGIHTSFSSA-----NHVIDYTA-RSSGAVFKSTFRVS-PNR 470
P ++ +WP T+ + IH SSA +H ID RSS A F S R S P+R
Sbjct: 10 PDYPMIEQRWPTTVRNSSIHPHVSSAHPSYRSHSIDAAVNRSSSACFHSPHRPSFPSR 67
>Z75549-9|CAA99914.1| 357|Caenorhabditis elegans Hypothetical
protein T19C4.6 protein.
Length = 357
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 238 NAVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISG 348
+A+ RV+TP Y P I H +PT + + TI G
Sbjct: 158 DAIARVHTPNYVPTENDILHTRVPTMGVIEVNFTIKG 194
>AY008124-1|AAG32077.1| 357|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 357
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 238 NAVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISG 348
+A+ RV+TP Y P I H +PT + + TI G
Sbjct: 158 DAIARVHTPNYVPTENDILHTRVPTMGVIEVNFTIKG 194
>M38249-1|AAA28060.1| 357|Caenorhabditis elegans G protein alpha
subunit protein.
Length = 357
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 244 VMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISG 348
+ RV+TP Y P I H +PT + + TI G
Sbjct: 160 IARVHTPNYVPTENDILHTRVPTMGVIEVNFTIKG 194
>Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical
protein F54D1.4 protein.
Length = 536
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 280 PQPIPHDTIPTWFHVPPSLT---ISGPPLSPLQESILAFPAQIM*STIPPGAAGPYLS 444
P P P DT+P + PPSL+ IS PP P Q+ + +Q+ ++ P + P+ S
Sbjct: 408 PVPPPSDTVPLFHFSPPSLSPCQISAPP--PPQQQYTDY-SQMPSTSSYPANSSPFQS 462
>AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear receptor
NHR-7 protein.
Length = 536
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 280 PQPIPHDTIPTWFHVPPSLT---ISGPPLSPLQESILAFPAQIM*STIPPGAAGPYLS 444
P P P DT+P + PPSL+ IS PP P Q+ + +Q+ ++ P + P+ S
Sbjct: 408 PVPPPSDTVPLFHFSPPSLSPCQISAPP--PPQQQYTDY-SQMPSTSSYPANSSPFQS 462
>AF039717-4|AAO21385.1| 303|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform e protein.
Length = 303
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 201 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 245
>AF039717-3|AAK82917.1| 530|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform a protein.
Length = 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 428 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 472
>AF039717-2|AAK82918.1| 508|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform b protein.
Length = 508
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 406 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 450
>AF039717-1|AAK82919.1| 510|Caenorhabditis elegans Abnormal dauer
formation protein16, isoform c protein.
Length = 510
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 408 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 452
>AF032112-1|AAC47803.1| 510|Caenorhabditis elegans DAF-16 protein.
Length = 510
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 408 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 452
>AF020344-1|AAB84392.1| 530|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16b protein.
Length = 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 428 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 472
>AF020343-1|AAB84391.1| 508|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16a2 protein.
Length = 508
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 406 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 450
>AF020342-1|AAB84390.1| 510|Caenorhabditis elegans fork
head-related transcriptionfactor DAF-16a1 protein.
Length = 510
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = -3
Query: 623 LDQPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSV 489
L P+ + N +P+ LP Y T I W S S P P +
Sbjct: 408 LRNPIVPSTNFKPMPLPGAYGNYQNGGITPINWLSTSNSSPLPGI 452
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 283 QPIPHDTI-PTWFHVPPSLTISGPPLSPLQESILAFPAQI 399
Q PH+ P H+ P +I PP P+Q I A PAQ+
Sbjct: 855 QSTPHNLCCPKTSHLVPE-SIPAPPFEPVQMPIPAPPAQV 893
>Z48585-10|CAJ43439.1| 338|Caenorhabditis elegans Hypothetical
protein ZK673.11b protein.
Length = 338
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 277 LPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESI 378
LPQP P +P + PPSL P P + I
Sbjct: 176 LPQPTPEFQLPAPTYSPPSLPSESPASKPTKIDI 209
>U64853-2|AAB04975.2| 529|Caenorhabditis elegans Hypothetical
protein K11G9.2 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = -3
Query: 617 QPVTFTKNIRPICLPSGGRAYAGXVATVIGWGSLRESGPQPSVLQ---EVSIPIWTNSEC 447
+P + C P G Y V G+ + + P +L+ VS +WT +
Sbjct: 9 KPKPLLNVLNSTCGPVQGNLYRHGNEEVHGYLGIPYAQPPIGILRFKKPVSADVWTETRD 68
Query: 446 RLKYGPAAP 420
KYGP P
Sbjct: 69 CTKYGPRCP 77
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 229 QGRNAVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQI 399
Q R Y P P P+P I H+P +L+ + P E ILA PA +
Sbjct: 2168 QQRQKENEQYPPEAQQAPSPVPAGMI----HIPETLSKEERAVQPTLEMILADPATV 2220
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 229 QGRNAVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQI 399
Q R Y P P P+P I H+P +L+ + P E ILA PA +
Sbjct: 2168 QQRQKENEQYPPEAQQAPSPVPAGMI----HIPETLSKEERAVQPTLEMILADPATV 2220
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 229 QGRNAVMRVYTPGYCPLPQPIPHDTIPTWFHVPPSLTISGPPLSPLQESILAFPAQI 399
Q R Y P P P+P I H+P +L+ + P E ILA PA +
Sbjct: 2168 QQRQKENEQYPPEAQQAPSPVPAGMI----HIPETLSKEERAVQPTLEMILADPATV 2220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,533
Number of Sequences: 27780
Number of extensions: 393747
Number of successful extensions: 1222
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -