Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1234
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen prot...    27   7.0  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    27   9.3  

>AF000198-7|AAB53052.1|  418|Caenorhabditis elegans Collagen protein
           50 protein.
          Length = 418

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 540 CPRRTLPTSERGSGGDAAXSAP 475
           CP RTL       GGDAA +AP
Sbjct: 300 CPPRTLGAGAYPEGGDAAAAAP 321


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 151 VTKCACDTVIENGLQLEIME*FTPITVLR*FYQSTYILN 267
           VT+  C T++  GL + +   F P  ++R F+Q+ Y++N
Sbjct: 885 VTQAVCSTLV--GLAITV---FVPAYLVRVFFQTVYLVN 918


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,588,362
Number of Sequences: 27780
Number of extensions: 161075
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)