Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1233
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   3.1  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.1  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.1  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.5  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   9.5  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 6   FFFFYTNVVKYVFLIFDCVCVCVCLFHNYSNSHI 107
           F  ++++     FL F  +CVCV L   +S SH+
Sbjct: 143 FIVYFSSFPILHFLFFFFLCVCVFLSFLFSLSHL 176


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 518 EPKPTSXARGAPCRSTNEALAE 453
           EP P S A  +P + + EALAE
Sbjct: 64  EPSPASSASASPVKKSAEALAE 85


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 219 WLSYCSSTTCNSMLDCRF*VYEYLTSQCHSC 127
           W+S      CNS  D +   Y +L  +C+SC
Sbjct: 342 WISTIRCNDCNSRCDTK---YHFLGHKCNSC 369


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 39  VFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERL 149
           +FL   CV     L +N SN+ +   IKK+S+  ERL
Sbjct: 268 LFLSILCVGYYHHLLNNPSNTELQSLIKKYSFYSERL 304


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 87  NYSNSHIFDYIKKHSYDI 140
           N  N ++FDYIK  ++D+
Sbjct: 217 NKVNQYVFDYIKDANFDV 234


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 515 PKPTSXARGAPCRSTNEALAETWSQKNQKLSXQVRSTATLP 393
           P P + A+  P   T +ALA    + NQ    QV  T   P
Sbjct: 600 PTPRTAAQEDPAEETTDALASAEGENNQ--MPQVLETEAAP 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,468
Number of Sequences: 5004
Number of extensions: 27936
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)