Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1233
         (536 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    26   1.7  
BX640881-1|CAE45937.1|  999|Homo sapiens hypothetical protein pr...    31   2.6  
BC110332-1|AAI10333.1|  412|Homo sapiens ZNF507 protein protein.       31   2.6  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    26   3.7  
AK125389-1|BAC86153.1|  147|Homo sapiens protein ( Homo sapiens ...    25   5.1  
AY339211-1|AAQ02646.1|  532|Homo sapiens nonintegrin platelet re...    26   5.9  
AB002110-1|BAB70694.1|  208|Homo sapiens Bradeion alpha protein.       25   6.3  

>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 25.8 bits (54), Expect(2) = 1.7
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 57  CVCVCVCLF 83
           CVCVC+C+F
Sbjct: 134 CVCVCICVF 142



 Score = 24.6 bits (51), Expect(2) = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 30  VKYVFLIFDCVCVCVCL 80
           V   F +  CVC+CVC+
Sbjct: 121 VSVCFCVSVCVCLCVCV 137


>BX640881-1|CAE45937.1|  999|Homo sapiens hypothetical protein
            protein.
          Length = 999

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 30   VKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDI 140
            ++Y  L+F   C C+C F + S  ++ D++K+H  +I
Sbjct: 950  MEYCVLLF---CCCICGFESTSKENLLDHMKEHEGEI 983


>BC110332-1|AAI10333.1|  412|Homo sapiens ZNF507 protein protein.
          Length = 412

 Score = 31.1 bits (67), Expect = 2.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +3

Query: 30  VKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDI 140
           ++Y  L+F   C C+C F + S  ++ D++K+H  +I
Sbjct: 363 MEYCVLLF---CCCICGFESTSKENLLDHMKEHEGEI 396


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane
          helix receptor protein.
          Length = 346

 Score = 25.8 bits (54), Expect(3) = 3.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 48 IFDCVCVCVCL 80
          +F CVC+CVC+
Sbjct: 47 VFVCVCICVCV 57



 Score = 21.0 bits (42), Expect(3) = 3.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +3

Query: 57  CVCVCVCLF 83
           CVCV VC++
Sbjct: 76  CVCVSVCVY 84



 Score = 20.6 bits (41), Expect(3) = 3.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 30 VKYVFLIFDCVCVCV 74
          V     ++ CVC+CV
Sbjct: 13 VSVCLYLYVCVCICV 27


>AK125389-1|BAC86153.1|  147|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43399 fis, clone OCBBF2009926. ).
          Length = 147

 Score = 24.6 bits (51), Expect(2) = 5.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 54  DCVCVCVCL 80
           +CVCVCVC+
Sbjct: 74  ECVCVCVCV 82



 Score = 24.2 bits (50), Expect(2) = 5.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 57  CVCVCVCLFHNYSNSHIFDYIK 122
           CVCVCVC+       H++   K
Sbjct: 81  CVCVCVCVRVGVVLGHLWPVTK 102


>AY339211-1|AAQ02646.1|  532|Homo sapiens nonintegrin platelet
          receptor for type I collagen protein.
          Length = 532

 Score = 26.2 bits (55), Expect(2) = 5.9
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 57 CVCVCVCLF 83
          CVC+CVCLF
Sbjct: 37 CVCLCVCLF 45



 Score = 22.2 bits (45), Expect(2) = 5.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 24 NVVKYVFLIFDCVCVCVCL 80
          N++  ++L    VCVC+C+
Sbjct: 24 NLIIGIYLYEKTVCVCLCV 42


>AB002110-1|BAB70694.1|  208|Homo sapiens Bradeion alpha protein.
          Length = 208

 Score = 24.6 bits (51), Expect(2) = 6.3
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +3

Query: 54  DCVCVCVCL 80
           +CVCVCVC+
Sbjct: 142 ECVCVCVCV 150



 Score = 23.8 bits (49), Expect(2) = 6.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 57  CVCVCVCLFHNY 92
           CVC+CVC+   Y
Sbjct: 153 CVCLCVCVSGTY 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,951,230
Number of Sequences: 237096
Number of extensions: 894563
Number of successful extensions: 2402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2377
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5273648886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)