Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1233
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine r...    31   0.40 
AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine re...    31   0.53 
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   2.8  
AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    28   3.7  
Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine re...    28   4.9  
AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical...    27   6.5  
AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ...    27   8.6  

>AF022980-14|AAG24190.1|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein57 protein.
          Length = 332

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 9   FFFYTNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDI 140
           F +Y  +  +VF+++      +C F   +N  I +YI+K  ++I
Sbjct: 127 FHWYLTISAFVFVLYFATWHAICYFPGRANVEIREYIRKDFFEI 170


>AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein55 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 9   FFFYTNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDI 140
           F +Y  +   VF+++      +C F   +N  I +YI+K  ++I
Sbjct: 127 FHWYLTISAVVFVVYFATWYAICYFPGRANVEIKEYIRKDFFEI 170


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 30  VKYVFLIFDCVCVCVCLFHNYSNSHIFD 113
           V++++++   VC+C+C+   YS SH+ D
Sbjct: 66  VRFLWVVVSLVCICLCM---YSFSHVKD 90


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 30  VKYVFLIFDCVCVCVCLFHNYSNSHIFD 113
           V++++++   VC+C+C+   YS SH+ D
Sbjct: 66  VRFLWVVVSLVCICLCM---YSFSHVKD 90


>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 36  YVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYD 137
           Y  L + C+C+ VCLF  Y+ S +++YI   + D
Sbjct: 101 YTSLHWLCLCIPVCLF-VYTLSEVYNYIMPDNRD 133


>Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical
           protein K06B4.3 protein.
          Length = 83

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +3

Query: 39  VFLIFDCVCVCVCLF---HNYSNS-HIFDYIKKHS 131
           VF++  C C C CLF   +N++NS + +D I   S
Sbjct: 48  VFIVCCCCCCCGCLFRSNNNFNNSNNSYDNISNDS 82


>AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine
           receptor, class z protein67 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 18  YTNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDY 116
           Y N++K    I+ C CV V  FH    + I  Y
Sbjct: 63  YYNMLKLTLPIWTCFCVSVYFFHRGHKNRISTY 95


>AL132952-25|CAB63388.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 21  TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 158
           T + KY+ L F    +C+C+F+  S   + D    +  D  ++ I+
Sbjct: 44  TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88


>AL132846-9|CAB63368.1|  513|Caenorhabditis elegans Hypothetical
           protein Y51H4A.25a protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 21  TNVVKYVFLIFDCVCVCVCLFHNYSNSHIFDYIKKHSYDIERLNIH 158
           T + KY+ L F    +C+C+F+  S   + D    +  D  ++ I+
Sbjct: 44  TKLPKYLLLFFGSTVICLCIFY-ISRPQLNDNFDPNISDKRKIRIY 88


>AF047656-7|AAC05108.2|  462|Caenorhabditis elegans Ligand-gated ion
           channel protein 6 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 137 VIAVLFNVIEYMAIRIIMKQTHAHTHT 57
           +IA +F V       II++QTH H HT
Sbjct: 306 IIAEIFVVTAATIASIIIQQTHHHVHT 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,409,562
Number of Sequences: 27780
Number of extensions: 160831
Number of successful extensions: 434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)