Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1232
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.3  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   5.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   7.1  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   7.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 250 TRRRQGREKGAHRTDRSRSQGDQGPERGNP 161
           T++ Q    GA     S  Q  Q P+RG+P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 289 IRRGSHHXRAEEGTRRRQGREKGAHRTDRSRSQGDQGPER 170
           I R   H R   G +R+  R+K      R  +    GP+R
Sbjct: 3   ISRDHWHKRRATGGKRKPIRKKRKFELGRPAANTKLGPQR 42


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 377 TSTGIFQGSSSDVTRCLKARRLRLWNRGC 291
           T   +F G  SD+      + L +W  GC
Sbjct: 241 TLVTMFTGLKSDIPPVAYVKALDVWMAGC 269


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 244 RRQGREKGAHRTDRSRSQGDQGPERGNP 161
           R   +E+  +RT+R RS+  +     NP
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNP 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,772
Number of Sequences: 438
Number of extensions: 4629
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)