Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1230
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92835-6|CAB07399.1|  496|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75526-8|CAA99773.1|  496|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF221132-1|AAF82410.1|  498|Caenorhabditis elegans diacylglycero...    29   2.4  
Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z92835-6|CAB07399.1|  496|Caenorhabditis elegans Hypothetical
           protein H19N07.4 protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 230 FPKPIERLVKFCIPNNFPWIIYIY 159
           + + +ERL+K  IPN+  W+++ Y
Sbjct: 318 YSRCLERLLKLAIPNHLIWLLFFY 341


>Z75526-8|CAA99773.1|  496|Caenorhabditis elegans Hypothetical
           protein H19N07.4 protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 230 FPKPIERLVKFCIPNNFPWIIYIY 159
           + + +ERL+K  IPN+  W+++ Y
Sbjct: 318 YSRCLERLLKLAIPNHLIWLLFFY 341


>AF221132-1|AAF82410.1|  498|Caenorhabditis elegans diacylglycerol
           acyltransferase protein.
          Length = 498

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 230 FPKPIERLVKFCIPNNFPWIIYIY 159
           + + +ERL+K  IPN+  W+++ Y
Sbjct: 320 YSRCLERLLKLAIPNHLIWLLFFY 343


>Z79605-6|CAB01906.3|  323|Caenorhabditis elegans Hypothetical
           protein ZK678.4 protein.
          Length = 323

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = -3

Query: 332 FSNLMFENIRILCFCGLIHNELLELYGLKL---CFFLFPKPIERLVKFCIPNNFPWIIY 165
           F++  F   RI  +CG I   +     + L   CF  F   I   V  C PN  P  ++
Sbjct: 96  FNSFWFSQPRIFTYCGFISLMVFASLLIPLFSSCFIYFRLDILTFVSGCAPNRHPITVF 154


>Z68301-8|CAA92626.2|  484|Caenorhabditis elegans Hypothetical
           protein W01B6.3 protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 350 LNFESYFSNLMFENIRILCFCGLIHNELLELYGLKLCFFLFPKPIER 210
           +NF    + L   + R+L  CGLI  E+  ++ + L F  +P P++R
Sbjct: 299 VNFSLASTRLKTIDNRLLLLCGLIFFEVFFIFHMPLPF--YPGPLDR 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,767,713
Number of Sequences: 27780
Number of extensions: 244851
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)