Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1230
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 325 ILCLKIFGYYAFAVLFIMSYW 263
           ++C  I+ Y+    L I SYW
Sbjct: 217 LVCYGIWVYFVPLFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 325 ILCLKIFGYYAFAVLFIMSYW 263
           ++C  I+ Y+    L I SYW
Sbjct: 93  LVCYGIWVYFVPLFLIIYSYW 113


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 498 FHNLIVTDCLTLKSRQTYCSQCLIRLRPENSHLIKKI 608
           F  L V D   + + Q  CS  L+    + S L+K++
Sbjct: 138 FDRLWVLDSGLVNNNQPMCSPKLLTFDLKTSKLVKQV 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,358
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)