Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1229
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591...    29   2.3  
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081...    28   3.0  
02_01_0210 + 1402037-1402066,1402449-1402544,1402611-1403033,140...    27   9.2  

>03_02_0146 +
           5916692-5917931,5918198-5918261,5918836-5919057,
           5919626-5919747,5920105-5920170,5920192-5920386,
           5920480-5921057,5921818-5921968,5922465-5922715
          Length = 962

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 429 TSPVLQGIAGAVKKIRSXVNNPVKP 355
           TSP+     GAVKKI S   +P+ P
Sbjct: 154 TSPISPNWPGAVKKIHSLATSPISP 178


>10_08_0299 -
           16607152-16607322,16607465-16607785,16607870-16608121,
           16608298-16608435,16608544-16608651,16608814-16609014,
           16609109-16609233,16609252-16609321,16609919-16610455
          Length = 640

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = -3

Query: 436 FRDQPSSARHRRSX*KDPIXSQ*SSEAKRFGSG 338
           FRDQPS  R R    KDP+ S    EA   G G
Sbjct: 534 FRDQPSRKRQREKILKDPLKSH-KPEAPVNGPG 565


>02_01_0210 +
           1402037-1402066,1402449-1402544,1402611-1403033,
           1403126-1403215,1403330-1403401,1403851-1403980,
           1404172-1404269
          Length = 312

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 447 LKQIFETSPVLQGIAGAVKKIRS 379
           +KQ+ E  PV++G+ GA+K+ +S
Sbjct: 266 VKQLGEKFPVIRGLLGAIKRKKS 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,481,073
Number of Sequences: 37544
Number of extensions: 70847
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)