Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1228
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0023 - 12364211-12365014,12365841-12366019,12366391-12366568     30   2.3  
07_03_0043 - 12741661-12741816,12741980-12742153,12742870-127429...    29   5.2  
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    28   6.9  

>11_04_0023 - 12364211-12365014,12365841-12366019,12366391-12366568
          Length = 386

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 707 GNGVTFFSVFFCGMPVLTLNYYYS 636
           G G   FS+FFCG  V+T  Y YS
Sbjct: 49  GYGFNSFSLFFCGPLVVTAQYGYS 72


>07_03_0043 -
           12741661-12741816,12741980-12742153,12742870-12742932,
           12744107-12744214,12744303-12744418,12745188-12745314,
           12746423-12746592,12747409-12747487,12747558-12747669,
           12748064-12748154,12748425-12748534,12748536-12748666,
           12749557-12749817
          Length = 565

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -1

Query: 270 EIXKRESKVRFTVD-FKRFCFFENSYDDSYLCNIRIR*SVYKNQSTFMKNDEFYNASIIK 94
           E  KRE K+   +   +    F N+++D     I +  S +KN   FMK+ E Y +  IK
Sbjct: 95  EDVKREVKILKALQGHENVVHFYNAFEDDNYVYIVMDKS-WKNSQMFMKSVEVYLSITIK 153

Query: 93  LLNEI 79
            L+E+
Sbjct: 154 CLSEL 158


>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 467 IMTRQTLHNKKNKQHPIVNKKPNFISASFEKI 562
           I  R  LH+KKNK   I  +KP  I+AS EK+
Sbjct: 655 ISQRCKLHSKKNKVDNIPQRKP-IINASQEKV 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,497
Number of Sequences: 37544
Number of extensions: 256608
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)