Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1228
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68159-6|CAA92287.5|  485|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
            T23F2.2b protein.
          Length = 1538

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 442  FSNLKQKVNNDASNITQQKE 501
            F NLKQK++ND SN +++K+
Sbjct: 958  FDNLKQKLDNDMSNYSKEKQ 977


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
            T23F2.2a protein.
          Length = 1534

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 442  FSNLKQKVNNDASNITQQKE 501
            F NLKQK++ND SN +++K+
Sbjct: 958  FDNLKQKLDNDMSNYSKEKQ 977


>Z68159-6|CAA92287.5|  485|Caenorhabditis elegans Hypothetical
           protein C33D9.6 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = +1

Query: 490 QQKEQTTSDRKQKT-KFYKRIVRKDPFQYWD 579
           ++K+QT SD KQKT +  KR+ ++DP + ++
Sbjct: 429 KEKDQTVSDLKQKTNQNNKRVDQEDPIEEYE 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,475
Number of Sequences: 27780
Number of extensions: 275381
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)