Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1228
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    26   0.43 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           26   0.43 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   7.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.3  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -1

Query: 630 CFYFTIYVPLRKLPRRLVPILKRI----FSNDALIKFGFLFTIGCCLFFLLCNV*RVIIN 463
           C Y  +YVP  + P + +P++  I    F   + I  G  + +   + F+  N    I+ 
Sbjct: 105 CLYLNVYVPADRTPSQSLPVIFWIHGGAFQFGSGIPMGAKYLMDSDVIFVTINYRLGILG 164

Query: 462 FL 457
           FL
Sbjct: 165 FL 166


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -1

Query: 630 CFYFTIYVPLRKLPRRLVPILKRI----FSNDALIKFGFLFTIGCCLFFLLCNV*RVIIN 463
           C Y  +YVP  + P + +P++  I    F   + I  G  + +   + F+  N    I+ 
Sbjct: 105 CLYLNVYVPADRTPSQSLPVIFWIHGGAFQFGSGIPMGAKYLMDSDVIFVTINYRLGILG 164

Query: 462 FL 457
           FL
Sbjct: 165 FL 166


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -1

Query: 300 FPMSIYVGRREIXKRESKVRFTVDFKR 220
           FP+++  G+  I ++ +K   T+ F+R
Sbjct: 531 FPITLQPGKNTIEQKSTKSSVTIPFER 557


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 698 VTFFSVFFCGMPVLTLNYYY 639
           ++ F + FC  P + +N YY
Sbjct: 96  ISNFLMMFCMSPPMVINCYY 115


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 750 NYPIFMILXSNNXFRKRGYFL*CFFL 673
           NYP FM+  S N  + RG F   FFL
Sbjct: 238 NYPPFMLSNSLNFPQIRGEFY--FFL 261


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 698 VTFFSVFFCGMPVLTLNYYY 639
           ++ F + FC  P + +N YY
Sbjct: 62  ISDFLMMFCMSPPMVINCYY 81


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 750 NYPIFMILXSNNXFRKRGYFL*CFFL 673
           NYP FM+  S N  + RG F   FFL
Sbjct: 238 NYPPFMLSNSLNFPQIRGEFY--FFL 261


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 300 FPMSIYVGRREIXKRESKVRFTVD 229
           FP+  Y   REI  +ES++   +D
Sbjct: 316 FPIYKYKYIREIMNKESRISAAID 339


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 300 FPMSIYVGRREIXKRESKVRFTVD 229
           FP+  Y   REI  +ES++   +D
Sbjct: 316 FPIYKYKYIREIMNKESRISAAID 339


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 210 FENSYDDSYLCNIRIR*SVYKNQSTFMKN 124
           F N  DD  L   +   S Y++Q+ F+KN
Sbjct: 262 FHNKDDDLILTLGKKEFSHYEHQNVFVKN 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,774
Number of Sequences: 438
Number of extensions: 3677
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)