Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1226
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 293 2e-80
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 292 4e-80
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 291 5e-80
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.54
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.2
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.8
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.8
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 5.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.7
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.7
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 293 bits (718), Expect = 2e-80
Identities = 132/190 (69%), Positives = 161/190 (84%)
Frame = -3
Query: 631 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 452
IKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 70 IKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129
Query: 451 ATGXKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 272
G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+
Sbjct: 130 QLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNM 189
Query: 271 GRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 92
GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 190 GRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSIT 249
Query: 91 EERDKRIAAK 62
EERD+R A K
Sbjct: 250 EERDRRRALK 259
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = -2
Query: 746 NPVPXKLRECLPLVIFLRNRXKYALTGNEVLKIVKQRLHK 627
+P P K RECLPL++FLRNR KYAL G EV I+ QRL K
Sbjct: 32 SPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIK 71
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 292 bits (716), Expect = 4e-80
Identities = 131/190 (68%), Positives = 161/190 (84%)
Frame = -3
Query: 631 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 452
I+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 70 IQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129
Query: 451 ATGXKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 272
G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+
Sbjct: 130 QLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNM 189
Query: 271 GRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 92
GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 190 GRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSIT 249
Query: 91 EERDKRIAAK 62
EERD+R A K
Sbjct: 250 EERDRRRALK 259
Score = 56.4 bits (130), Expect = 4e-09
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = -2
Query: 746 NPVPXKLRECLPLVIFLRNRXKYALTGNEVLKIVKQRL 633
+P P K RECLPL++FLRNR KYAL G EV I+ QRL
Sbjct: 32 SPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRL 69
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 291 bits (715), Expect = 5e-80
Identities = 131/190 (68%), Positives = 161/190 (84%)
Frame = -3
Query: 631 IKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRV 452
IKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV
Sbjct: 70 IKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRV 129
Query: 451 ATGXKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNL 272
G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++ M+TGGRN+
Sbjct: 130 QLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNM 189
Query: 271 GRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 92
GRVGTIV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I
Sbjct: 190 GRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSIT 249
Query: 91 EERDKRIAAK 62
EERD+R A K
Sbjct: 250 EERDRRRALK 259
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = -2
Query: 746 NPVPXKLRECLPLVIFLRNRXKYALTGNEVLKIVKQRLHK 627
+P P K RECLPL++FLRNR KYAL G EV I+ QRL K
Sbjct: 32 SPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIK 71
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Frame = +2
Query: 131 DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 256
+ RLR+L + Y V+ P EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -3
Query: 577 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGXKNVPYL-VTHDGRT 401
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 400 IR 395
++
Sbjct: 1778 LK 1779
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 377 QSQRFHPVRHRNYED 333
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 319 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 215
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 410 WPHHPLPRPTYQSQR 366
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 407 PHHPLPRPTYQSQRFHPVRHRNYEDY 330
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 482 SLLRGDTVDCESALNIID*TKQ 547
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,446
Number of Sequences: 5004
Number of extensions: 62826
Number of successful extensions: 200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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