Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1226
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.11 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.3  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 482 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 598
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 243 RDIPAPSTLCTSRTPRDTPSP 181
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/44 (25%), Positives = 16/44 (36%)
 Frame = -2

Query: 212  HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 81
            H G  G  + H      H+R G + +     R    P    G+G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSG 1798


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = -2

Query: 212 HQGLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 96
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 388 LGSGWCGHHALPSTEHSXVRSPH 456
           +G G    HA P   HS   +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 243 RDIPAPSTLCTSRTPRDTPSP 181
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 605 SPNFPINLYEGVVSQFSRLRFRSKHT 682
           S N P  LY  + SQF R R R  +T
Sbjct: 253 SANLPSPLYPWMRSQFERKRGRQTYT 278


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 188 LRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 54
           ++ E  QR H+ Q H     + A Q H   +++   Q  R Q R+
Sbjct: 133 IKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 209 DVHNVEGAGMSLAGHD 256
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 446 GRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 559
           G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 77  GQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -3

Query: 232 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 119
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -3

Query: 232 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 119
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 629 YEGVVSQFSRLRFRSKHTSXDSSGKSPGASTRAT 730
           YE   ++  +L  RSK  S +S G+S  ++T  T
Sbjct: 63  YELRRAREKKLSKRSKSRSPESRGRSNASNTSKT 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,456
Number of Sequences: 438
Number of extensions: 4784
Number of successful extensions: 26
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)