Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1221
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0443 - 24379756-24379794,24379896-24379967,24380054-243801...    29   3.0  
03_04_0214 + 18688480-18688832,18688956-18688999,18689039-186891...    29   3.9  
03_05_0509 - 25032494-25033156                                         29   5.2  
03_06_0574 + 34825075-34825362,34825635-34825683,34825847-348260...    28   9.1  

>03_05_0443 -
           24379756-24379794,24379896-24379967,24380054-24380161,
           24380264-24380373,24381500-24381605
          Length = 144

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +3

Query: 378 P*CACNRIPMLTNTSLYRXARARTVLPTRSGPSSNALPPRNRSRFNVPGTTF--TGRDKN 551
           P   C     +TNT +   A   + +PT SG S NA  P + S +N P  T   T R +N
Sbjct: 58  PSVKCAICHYITNTGMNTVAPTPSPMPTSSGSSYNA--PPSGSSYNAPPPTSAPTSRPQN 115


>03_04_0214 +
           18688480-18688832,18688956-18688999,18689039-18689101,
           18689883-18689956,18691526-18692017
          Length = 341

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 553 DRPTIPAI*DGILSPHPTGSNIFIVTEVPV 642
           DRP +P I    +S +PT   + I++EVP+
Sbjct: 200 DRPLVPTIKTFQISTNPTTEGLGIISEVPI 229


>03_05_0509 - 25032494-25033156
          Length = 220

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 379 HDAHATESQCSPTQACIGXLGLGQCYPPDRVLHQT 483
           H  H +E+ C PT   +     G  + PD  L ++
Sbjct: 23  HRRHRSETSCPPTSVAVAAARAGDAHAPDHPLRRS 57


>03_06_0574 +
           34825075-34825362,34825635-34825683,34825847-34826021,
           34826118-34826188,34826764-34827491
          Length = 436

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 25/87 (28%), Positives = 33/87 (37%)
 Frame = -3

Query: 601 DAVIVYHLKWPELLVCLFLSRPVNVVPGTLNLERLRGGRAFDEGPDRVGSTVRALAXRYR 422
           D VIV    W E  +  F     N+    +  E  RGG     G +  G      A   R
Sbjct: 211 DDVIVIKSGWDEYGIS-FARPSTNISISNITGET-RGGAGIAFGSEMSGGISEVRAEGLR 268

Query: 421 LVLVSIGIRLHAHHGQGHINHDSYIKD 341
           +V    GIR+    G+G    + YI D
Sbjct: 269 IVNSMHGIRIKTAPGRGGYVKNVYISD 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,093,149
Number of Sequences: 37544
Number of extensions: 362562
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)