Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1221
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41550-4|AAP31434.3|  412|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    30   2.0  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    30   2.0  
AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical...    30   2.0  
U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z78536-1|CAB01715.2|  417|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U41550-4|AAP31434.3|  412|Caenorhabditis elegans Hypothetical
           protein R04A9.5 protein.
          Length = 412

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 505 ERLRGGRAFDEGPDRVGSTVRALAXRYRLVLVSIGIRLH 389
           E+   G   +E PD++ STVR +    R  L  +G+RLH
Sbjct: 32  EKFTKGYIKEELPDKICSTVRKVIKIPRSALEKVGVRLH 70


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 336 GRSLMYESWLICPCP*CACNRIPMLTNTSLYRXARARTVLPTRSGPSSNALPPRNRSRFN 515
           G S+  E W ICP P        M+ N  +   +  +  LP R+      LPP+     +
Sbjct: 546 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 598

Query: 516 VPGTTFT 536
           VP  T T
Sbjct: 599 VPQVTIT 605


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/67 (29%), Positives = 28/67 (41%)
 Frame = +3

Query: 336 GRSLMYESWLICPCP*CACNRIPMLTNTSLYRXARARTVLPTRSGPSSNALPPRNRSRFN 515
           G S+  E W ICP P        M+ N  +   +  +  LP R+      LPP+     +
Sbjct: 643 GGSVCREGWCICPDP-------SMIVNRGICIQSGPKPTLPPRTPIPQVPLPPQLPISVH 695

Query: 516 VPGTTFT 536
           VP  T T
Sbjct: 696 VPQVTIT 702


>AL023828-13|CAA19457.2|  419|Caenorhabditis elegans Hypothetical
           protein Y17G7B.11 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 10  FFLNLTPYNYXYWMNTSNIKTAQILKKPSKNLRVNVPTS*VVKNSFRP 153
           F LN+TP      +NT++  T  ILKK    + VN+P    V     P
Sbjct: 153 FDLNITPTAINPMVNTASKNTGLILKKGLVTITVNLPKRGYVAGEIMP 200


>U64859-10|AAC69091.2|  383|Caenorhabditis elegans Hypothetical
           protein R09F10.1 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 85  KKPSKNL--RVNVPTS*VVKNSFRPSGLTEASYILT 186
           +KP K +  R+ +P   ++KN   P+G ++ SY+LT
Sbjct: 11  QKPCKAVDDRIEIPVETLIKNRKYPNGNSDLSYVLT 46


>Z81030-14|CAJ43441.1|   75|Caenorhabditis elegans Hypothetical
           protein C01G10.17 protein.
          Length = 75

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 549 NRQTNNSGHLRWYTITASNRQ*YLYRNGSAG 641
           N   NN+G+  +Y    +N   Y Y NG +G
Sbjct: 29  NNYNNNNGYTTYYYYPNNNNNGYYYNNGCSG 59


>Z78536-1|CAB01715.2|  417|Caenorhabditis elegans Hypothetical
           protein C07A4.2 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = +1

Query: 10  FFLNLTPYNYXYWMNTSNIKTAQILKKPSKNLR-VNVPTS*VVKNSFRPSGLTEAS---- 174
           F+L    YNY  W   S  KT    +   KN R + V  S V  +S R   ++ +     
Sbjct: 330 FYLEGIGYNYSSWRPMSFFKTGHFTQLIWKNSRKIGVGVSIVKSSSIRSPCVSSSPNMYF 389

Query: 175 -YILTSY*PCKNY 210
            Y++  Y P  N+
Sbjct: 390 IYVVVKYDPAGNF 402


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,735
Number of Sequences: 27780
Number of extensions: 314673
Number of successful extensions: 717
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)