Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1217
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   2.2  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   6.6  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   8.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.7  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 513 LPIRNFSQIYFIVIN*TSMGNITPTHFQEGXVILFVGAI 397
           LPI+  S + F++I+ T +G    T FQ    +  +GA+
Sbjct: 342 LPIKPLSSLLFVLISFTCIGLYVRTAFQNPGYVDKIGAV 380


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 280 LDRYHTDPNVFVR*LSRISADTSXC 206
           L+RYH   N+F++ L +     S C
Sbjct: 706 LERYHASANIFIQMLRKTDVSNSVC 730


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 577 LKTDLRLWDFLRSQEYFFGFLSTNKELFXNLFHSNKLDID 458
           L+  +R+WD   S +    F S+  ++   +F   K D+D
Sbjct: 198 LQHGIRIWDNFLSSKSINSFESSESQMQLKIFRQAKQDLD 237


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 131 LIVTHYIXSLYTSTVYFIYFIIDF*ALLNCVYVI 30
           LI T    S   S V+++  ++D   L NC+YV+
Sbjct: 186 LIQTSLHHSSDNSLVFYLEMLLDSLDLRNCIYVV 219


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 353 APIVVEAKEKADPVPIAPTNKITXPSWKCVGVILPID 463
           AP  V ++  A P P APT + T P+ +      P+D
Sbjct: 345 APTTVSSERNAPPYPSAPT-RPTPPTVQTSSSAAPVD 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,219
Number of Sequences: 5004
Number of extensions: 41738
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)