Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1216
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   6.6  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   8.7  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 473 TFEQNECFXKHVT*CKVVSVPFFYNELL 390
           TF Q      + T C ++ VPFFYN+ L
Sbjct: 248 TFMQVSQLVGYGTKCLIILVPFFYNQYL 275


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 255 LYRTFWCVYSLSFDRDSRFYV 317
           + R FWC  ++++D +S F+V
Sbjct: 931 ILRKFWCRKNMTYDENSPFHV 951


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 421 LVSLFFIMNFYRFWLVRCC 365
           ++S+ FI NF+ F+L RCC
Sbjct: 31  ILSVIFI-NFFFFYLCRCC 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,295
Number of Sequences: 5004
Number of extensions: 45520
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)