Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1214
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   2.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   2.9  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   3.8  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   5.0  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   5.0  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.0  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   5.0  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   6.6  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   6.6  

>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -2

Query: 398 IENEXDDKSKAGIEKINGLLESFMGINDSELASQMWDLAEGKQNXMELAEAI 243
           +  +  D S   +  +N   E F    + ELA + W +A+ +    +L EAI
Sbjct: 545 VSKDKKDISAVNLADLNKRFEGFEKRYEEELAIRDWKIAQLEDKLAKLTEAI 596


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 632 DHIEKLNGENMVGKRYYEVAKIXKDIPKGT 543
           DH E +NG N+     YEVA   K + + T
Sbjct: 743 DHSEVINGVNLFSTAIYEVANNAKGLSRTT 772


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 463 PDLPLPVLGPMLPNPLFNGSTNRIIKVVPFGMS 561
           P L LP+  P   N  +NG++   I    FGMS
Sbjct: 2   PSLALPINKPSHHNVNYNGNSFNSIHATSFGMS 34


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 326 GINDSELASQMWDLAEGKQNXMELAEAIDNSDLQEFGFTD 207
           G+ DSE+ + + D  + + + M   EAI+N +  E   TD
Sbjct: 549 GLTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVCTD 588


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/78 (23%), Positives = 33/78 (42%)
 Frame = -2

Query: 422 FKANGQATIENEXDDKSKAGIEKINGLLESFMGINDSELASQMWDLAEGKQNXMELAEAI 243
           F    QA +E E   + K   ++++G  E        + A +  +  + K   +EL +  
Sbjct: 529 FARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKEREQYAKKENERWDKKIAEIELEQFH 588

Query: 242 DNSDLQEFGFTDEFIIEL 189
           D     +  + DEF +EL
Sbjct: 589 DYKPQVDIKYVDEFGVEL 606


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 338 ESFMGINDSELASQMWDLAEGKQNXMELAEAIDNSDLQE-FG 216
           +S + I    LA + W + EGK +  E+A+A     L E FG
Sbjct: 279 DSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRLLEVFG 320


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 581 EVAKIXKDIPKGTTFIMRLVEPLKSGF 501
           EV  I KD+  G +F++ + EP+   F
Sbjct: 111 EVTTIVKDLNNGDSFVLNVTEPVDPEF 137


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 316 SLIPINDSSRPLIFSIPAFDLSSXSFSIVAWPFALKRXVSFPEP 447
           +L P+   SRP   S+P   L S +    A PF L+     P P
Sbjct: 566 ALSPLRIRSRPSPLSLPPEPLLSPTIDYSATPFPLEPPPESPGP 609


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 537 KSSSLRYVFXNFCHLIISFPNHILTIQFLNM-ISDLNM 647
           KS   RY+    CH I   P  IL+  F  +  S+L M
Sbjct: 520 KSPQGRYIVIGTCHSIEKIPYEILSESFFELKFSELEM 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,748
Number of Sequences: 5004
Number of extensions: 59411
Number of successful extensions: 151
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)