Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1214
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1181 - 26732439-26732528,26732883-26732963,26733104-267331...    31   0.98 
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417...    31   1.3  
07_03_1296 + 25583195-25584385                                         29   3.9  
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112...    28   6.9  
07_03_0294 + 16342606-16343100,16343359-16344120                       28   6.9  

>12_02_1181 -
           26732439-26732528,26732883-26732963,26733104-26733163,
           26733372-26733451,26733815-26733866,26733987-26734124,
           26734203-26734466,26735895-26735952,26736153-26736262,
           26736385-26736432,26736812-26736823
          Length = 330

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = -2

Query: 524 VEPLKSGFGSIGPKTGSGRSGKKQNFGSGKETXRFKANGQATIENEXDDKSKAGIEKING 345
           V+ L SG G+ G  TG+GR  ++QN          K  G   +E+      K G  KI G
Sbjct: 182 VDGLVSGIGTGGTITGAGRYLREQN-------PDIKIYGVEPVESAVLSGGKPGPHKIQG 234

Query: 344 LLESFM-GINDSELASQMWDLAEGKQNXMELAEAI 243
           +   F+ G+ D +L ++   ++      +E+A+A+
Sbjct: 235 IGAGFVPGVLDVDLINETVQVS--SDEAIEMAKAL 267


>05_01_0500 -
           4171090-4171191,4171989-4172061,4172376-4172701,
           4173164-4173555,4174521-4174853,4177118-4177209,
           4178052-4178111,4178760-4178903,4180142-4180213,
           4180345-4180510,4180776-4180923
          Length = 635

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/48 (31%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
 Frame = -2

Query: 290 DLAEGKQNXMELAEAIDNSDLQEFGFTDEFIIELWG-VITDARSGRLS 150
           + A  + N ++L EA++ S  +EF F+ EF+++++G ++++ +SG L+
Sbjct: 558 NFASDECNSIQL-EAVELSGPREFFFSPEFLVDMFGLLLSEVKSGLLA 604


>07_03_1296 + 25583195-25584385
          Length = 396

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
 Frame = -2

Query: 476 SGRSGKKQNFGSGKETXRFK-ANGQATIENEXDDKSKAGIEKINGLLESFMGINDSELAS 300
           + +SG     G G    R K    +  +       +  G+E  +G+  S +G +     +
Sbjct: 273 ANKSGASSGVGVGPSRGRIKKTTARKKVGGGFKKNASGGVE--SGIEPSLLGPDSWNGVA 330

Query: 299 QMWDLAEGKQ-NXMELAEAIDNSDLQEFGFTDEFIIELWGVITDARSGRL 153
           +   +   +  N  E+A+  D S +  FG  +E   +L    TDA  G L
Sbjct: 331 ESGSMVGARGININEVAKGTDGSSMMHFGGDEEIGFDLDVDATDAILGNL 380


>09_03_0130 -
           12609417-12610462,12610786-12611040,12611139-12611253,
           12611376-12611428,12611854-12612114,12612252-12612302,
           12612412-12612660,12612779-12613007,12613292-12613666
          Length = 877

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/90 (20%), Positives = 35/90 (38%)
 Frame = +1

Query: 271 CFPSARSHICDANSLSLIPINDSSRPLIFSIPAFDLSSXSFSIVAWPFALKRXVSFPEPK 450
           C   A +   D    S+  I  +   ++F          +  ++ +PFA++R      P+
Sbjct: 386 CITGAEAMFADLGHFSVKSIQVAFTAVVFPCLLIAYMGQAAYLMKYPFAVERIFYDSVPE 445

Query: 451 FCFFPDLPLPVLGPMLPNPLFNGSTNRIIK 540
             F+P   +  L  M+ +     +T   IK
Sbjct: 446 ILFWPVFVIATLAAMIASQAMISATFSCIK 475


>07_03_0294 + 16342606-16343100,16343359-16344120
          Length = 418

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 524 VEPLKSGFGSIGPKTGSGRSGKKQNFGSGKETXRFKANGQ-ATIENEXDDKSKAGIEKIN 348
           VE  +SG+G    +TG+G    +++  +GK   R    G+   +  E D+    G+  I+
Sbjct: 164 VEMGRSGYGRSEARTGAGTDADRESVPAGKGVARESVPGKLCELFGELDN----GLHLIS 219

Query: 347 GLL 339
           GLL
Sbjct: 220 GLL 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,469
Number of Sequences: 37544
Number of extensions: 358406
Number of successful extensions: 957
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)