Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1214
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical p...   110   1e-24
Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical pr...   106   2e-23
Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical pr...    31   0.87 
AB095019-1|BAC22611.1|  822|Caenorhabditis elegans ubiquitin-spe...    31   0.87 
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    30   1.5  
Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    28   6.2  
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    28   8.1  
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    28   8.1  

>U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical
           protein C35D10.2 protein.
          Length = 357

 Score =  110 bits (264), Expect = 1e-24
 Identities = 56/163 (34%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
 Frame = -2

Query: 650 PHIEVGDHIEKLNGENMVGKRYYEVAKIXKDIPKGTTFIMRLVEPLKSGFGSIGPKTGSG 471
           P  +VG  IE +NGE ++GKR+Y+VA+I K++ +G   ++RL+ P  +  G++  KT +G
Sbjct: 176 PATQVGQLIEAVNGECVLGKRHYQVARILKNVRRGEECVVRLIAPKTADPGTM--KT-TG 232

Query: 470 RSGKKQNFGSGKETXRFKANGQATIENEXDDKSKAGI-EKINGLLESFMGINDSELASQM 294
           ++G     G  K T RFK+ G   +E+  D   +A +  K+N + + ++G+ D +LA ++
Sbjct: 233 KTGG----GLAKGTIRFKSEGGFAVEDVQDQMIQAEMCGKLNEIFDQYLGVQDDQLAMRI 288

Query: 293 WDLAEGKQNXMELAEAIDNSDLQEFGFTDEFIIELWGVITDAR 165
           W+ A   +  ++L+EAI  S+L  F F D  + ++WG+I D +
Sbjct: 289 WETASNCETLLQLSEAIKESELSMFDFPDGMVFDMWGIIGDLK 331


>Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical
           protein F44D12.4 protein.
          Length = 357

 Score =  106 bits (254), Expect = 2e-23
 Identities = 54/163 (33%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
 Frame = -2

Query: 650 PHIEVGDHIEKLNGENMVGKRYYEVAKIXKDIPKGTTFIMRLVEPLKSGFGSIGPKTGSG 471
           P  +VG  IE +NGE+++GKR+Y+VA++ K I +G   I+RL+ P  +  G++       
Sbjct: 176 PATQVGQLIEAINGESVLGKRHYQVARMLKSIRRGEECIIRLIAPKSADPGTM------- 228

Query: 470 RSGKKQNFGSGKETXRFKANGQATIENEXDDKSKAGI-EKINGLLESFMGINDSELASQM 294
           +  +K      K T RFK+ G   +E+  D   +A +  K+N L + ++G+ D +LA ++
Sbjct: 229 KMTRKTGGDLAKGTIRFKSEGGFAVEDIQDQMIQAEMCGKLNELFDQYLGVQDDQLAMRI 288

Query: 293 WDLAEGKQNXMELAEAIDNSDLQEFGFTDEFIIELWGVITDAR 165
           W+ A   +   +L+EAI  S+L  F F D  + ++WG+I D +
Sbjct: 289 WETASNCETLWQLSEAIKQSELSMFEFPDGLVFDMWGIIGDLK 331


>Z74033-4|CAA98471.2|  822|Caenorhabditis elegans Hypothetical
           protein F38B7.5 protein.
          Length = 822

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -2

Query: 293 WDLAEGKQNXMELAEAIDNSDLQEFGFTDEFIIELWGVITDARSGRLS*NXKT 135
           +DL + +QN  ++ E  +N D Q+     EF++ L G + DA  G +S N KT
Sbjct: 302 YDLLQYRQNVGKINEEFNNDDQQD---AHEFLLTLIGAVDDA-MGVMSKNVKT 350


>Z37139-3|CAA85492.2|  793|Caenorhabditis elegans Hypothetical
           protein C14B1.6 protein.
          Length = 793

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 204 FICKTKFLKIAVIDSLCEFHXILFSFGKIPHLRCQ 308
           F   T++L   ++D+  EFH I+F+FG  P  + Q
Sbjct: 624 FEAMTEYLTELLLDNTIEFHTIIFAFGGTPTFKKQ 658


>AB095019-1|BAC22611.1|  822|Caenorhabditis elegans
           ubiquitin-specific protease protein.
          Length = 822

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -2

Query: 293 WDLAEGKQNXMELAEAIDNSDLQEFGFTDEFIIELWGVITDARSGRLS*NXKT 135
           +DL + +QN  ++ E  +N D Q+     EF++ L G + DA  G +S N KT
Sbjct: 302 YDLLQYRQNVGKINEEFNNDDQQD---AHEFLLTLIGAVDDA-MGVMSKNVKT 350


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -2

Query: 680 LKKAPLFQEYPHIEVGDHIEKLNGENMVGKRYYEVAKIXKDIPKGTTFIM 531
           ++K  LFQE      GD + +LNG ++ GK+  E+  I +++    TF++
Sbjct: 268 VEKMNLFQE------GDELLELNGSSLKGKQVNEICDILRNLSGPITFVV 311


>Z68750-1|CAA92963.1|  284|Caenorhabditis elegans Hypothetical
           protein K01A6.4 protein.
          Length = 284

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 512 KSGFGSIGPKTGSGRSGKKQNFGSGKETXRFKANGQATIENEXDDKSKAG 363
           +SGFG  G ++G G + ++ +FG   +   F+ N Q   +     +S +G
Sbjct: 173 QSGFGGQGMQSGFGMNSQQGDFGGQGQQSGFEGNTQGHSQGGFGGQSSSG 222


>Z68316-7|CAM35840.1|  310|Caenorhabditis elegans Hypothetical
           protein K08E4.8 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = +3

Query: 525 QSHYKSSSLRYVFXNFCHLIISFPNHILTIQFLNMISDLNMGVFLKQW 668
           Q+HYK+S          + I++F + IL +    +++D ++ +FLK W
Sbjct: 174 QNHYKASLKLGDARMTLNDILAFNSSILWVNCRPILTDKDVNIFLKHW 221


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 242 DNSDLQEFGFTDEFIIELWGVITDAR 165
           +N +L  FGF  +F+++ +G + DAR
Sbjct: 108 ENGELTPFGFDRKFLLQTYGRLCDAR 133


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 509 SGFGSIGPKTGSGRSGKKQNFGSGKETXRFKANGQATIEN 390
           SG GS G  +G G SG+    GSG+ +     +G+ T+EN
Sbjct: 99  SGEGS-GEASGEG-SGEASGEGSGEASGEGSGSGEETVEN 136


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 509 SGFGSIGPKTGSGRSGKKQNFGSGKETXRFKANGQATIEN 390
           SG GS G  +G G SG+    GSG+ +     +G+ T+EN
Sbjct: 99  SGEGS-GEASGEG-SGEASGEGSGEASGEGSGSGEETVEN 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,914,515
Number of Sequences: 27780
Number of extensions: 325428
Number of successful extensions: 989
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)