Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1214
(750 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 26 0.43
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 26 0.43
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 26 0.43
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 25 1.0
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 23 3.1
AB095513-1|BAC76335.1| 39|Apis mellifera brood-complex protein. 23 3.1
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 5.3
AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced prot... 22 5.3
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 22 5.3
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 9.3
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 9.3
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 21 9.3
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.8 bits (54), Expect = 0.43
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 19 LPKLSFYHNHDCTIGTCFNLI 81
LPK+S+ + D +GTCF ++
Sbjct: 274 LPKISYVKSIDVYLGTCFVMV 294
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 25.8 bits (54), Expect = 0.43
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 19 LPKLSFYHNHDCTIGTCFNLI 81
LPK+S+ + D +GTCF ++
Sbjct: 274 LPKISYVKSIDVYLGTCFVMV 294
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 25.8 bits (54), Expect = 0.43
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 19 LPKLSFYHNHDCTIGTCFNLI 81
LPK+S+ + D +GTCF ++
Sbjct: 213 LPKISYVKSIDVYLGTCFVMV 233
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 24.6 bits (51), Expect = 1.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 445 AQEKKLYVLKRMAKQQLKMSXMTNQRLELKKSTVYWNHL 329
+ E + +L+++ K L S T + KST+ NHL
Sbjct: 307 SHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHL 345
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 23.0 bits (47), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 268 IXWNSQRLSITAIFKNL 218
+ WN+ + SIT+ F+NL
Sbjct: 9 LRWNNYQSSITSAFENL 25
>AB095513-1|BAC76335.1| 39|Apis mellifera brood-complex protein.
Length = 39
Score = 23.0 bits (47), Expect = 3.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 268 IXWNSQRLSITAIFKNL 218
+ WN+ + SIT+ F+NL
Sbjct: 9 LRWNNYQSSITSAFENL 25
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 22.2 bits (45), Expect = 5.3
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 511 RADSVASVLKPVVGGQEKNKTLAQEKKLYVLKRMAKQQLKMSXMTNQRL 365
RA+ +A K Q+ K L + KK+ +KR+ + K+ M +++
Sbjct: 416 RAEILAKEHK-AAADQKLEKHLIEYKKMLKIKRLFGKDRKIMDMVREKI 463
>AB264335-1|BAF44090.1| 87|Apis mellifera ecdysone-induced protein
75 protein.
Length = 87
Score = 22.2 bits (45), Expect = 5.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 136 LRLNLRKCTYCEL 98
LR+N +C YC L
Sbjct: 64 LRINRNRCQYCRL 76
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 22.2 bits (45), Expect = 5.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 136 LRLNLRKCTYCEL 98
LR+N +C YC L
Sbjct: 113 LRINRNRCQYCRL 125
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 9.3
Identities = 6/24 (25%), Positives = 13/24 (54%)
Frame = -3
Query: 376 NQRLELKKSTVYWNHLWVSMIVNW 305
N++ ++ KS V+ +W + W
Sbjct: 67 NEKNQIMKSNVWLRFIWTDYQLQW 90
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 479 GSGRSGKKQNFGS 441
G GRSGKK F +
Sbjct: 367 GRGRSGKKSKFNA 379
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.4 bits (43), Expect = 9.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 572 LPPHNIFSQPYSHHSISQYDLRPQY 646
+PP + + P H ++ Y L+P Y
Sbjct: 391 VPPISGSATPVFHQEMALYYLKPSY 415
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,277
Number of Sequences: 438
Number of extensions: 4408
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -