Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1212
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 60 2e-09
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 59 3e-09
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 58 6e-09
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 58 7e-09
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 43 2e-04
09_04_0109 - 14674980-14675004,14675861-14676468 32 0.42
03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163 31 1.3
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 5.2
12_01_0034 - 288931-289201,289284-289398,289524-289639,289805-28... 28 6.9
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 28 6.9
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 28 6.9
01_01_1134 + 8994315-8995892 28 6.9
07_01_0200 + 1433859-1434377 28 9.1
07_01_0196 + 1400708-1401226 28 9.1
07_01_0192 + 1367558-1368076 28 9.1
07_01_0188 + 1334405-1334923 28 9.1
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 28 9.1
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/71 (39%), Positives = 44/71 (61%)
Frame = -1
Query: 603 PHVKREDYQLTDISDDGYLTLMADNGDLREDLKNPGW*PRAHSCVLTSTSGKELLCTVLK 424
PHV R DYQL DIS+DG+++L+ ++G ++DL+ P GK+L+ TV+
Sbjct: 1420 PHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIKDGFAEGKDLIVTVMS 1479
Query: 423 SCGEECVIAVK 391
+ GEE + A+K
Sbjct: 1480 AMGEEQICALK 1490
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = -2
Query: 686 KVHLVGIDIFNGKKYEDICPS 624
K H V IDIFNGKK EDI PS
Sbjct: 1393 KCHFVAIDIFNGKKLEDIVPS 1413
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 736 KIVKMSPSKTGK-ARPPXKFTWLGLISSMVKSMKISVPPPHNMDVP 602
K+V++S SKTGK F + + + K ++ VP HN DVP
Sbjct: 1377 KVVEVSTSKTGKHGHAKCHFVAIDIFNG--KKLEDIVPSSHNCDVP 1420
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = -1
Query: 603 PHVKREDYQLTDISDDGYLTLMADNGDLREDLKNPGW*PRAHSCVLTSTSGKELLCTVLK 424
PHV R +YQL DIS+DG+++L+ +NG+ ++DL+ P GK+L+ TV+
Sbjct: 117 PHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIKDGFGEGKDLVVTVMS 176
Query: 423 SCGEECVIAVK 391
+ GEE + A+K
Sbjct: 177 AMGEEQICALK 187
Score = 32.3 bits (70), Expect = 0.42
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2
Query: 686 KVHLVGIDIFNGKKYEDICPS 624
K H V IDIF KK EDI PS
Sbjct: 90 KCHFVAIDIFTAKKLEDIVPS 110
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -3
Query: 736 KIVKMSPSKTGKARPPXKFTWLGLISSMVKSMKISVPPPHNMDVP 602
K+V++S SKTGK K ++ + K ++ VP HN DVP
Sbjct: 74 KVVEVSTSKTGK-HGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVP 117
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 58.4 bits (135), Expect = 6e-09
Identities = 27/71 (38%), Positives = 45/71 (63%)
Frame = -1
Query: 603 PHVKREDYQLTDISDDGYLTLMADNGDLREDLKNPGW*PRAHSCVLTSTSGKELLCTVLK 424
PHV R +YQL DIS+DG+++L+ ++G+ ++DL+ P GK+L+ TV+
Sbjct: 102 PHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMS 161
Query: 423 SCGEECVIAVK 391
+ GEE + A+K
Sbjct: 162 AMGEEQICALK 172
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = -2
Query: 686 KVHLVGIDIFNGKKYEDICPS 624
K H V IDIFNGKK EDI PS
Sbjct: 75 KCHFVAIDIFNGKKLEDIVPS 95
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 736 KIVKMSPSKTGK-ARPPXKFTWLGLISSMVKSMKISVPPPHNMDVP 602
K+V++S SKTGK F + + + K ++ VP HN DVP
Sbjct: 59 KVVEVSTSKTGKHGHAKCHFVAIDIFNG--KKLEDIVPSSHNCDVP 102
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = -1
Query: 603 PHVKREDYQLTDISDDGYLTLMADNGDLREDLKNPGW*PRAHSCVL-TSTSGKELLCTVL 427
PHV R DYQL DIS+DG+++L+ ++G+ ++DL+ P + GK+++ TV+
Sbjct: 85 PHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIKNGFGEEGKDMILTVM 144
Query: 426 KSCGEECVIAVK 391
+ GEE + AVK
Sbjct: 145 SAMGEEQICAVK 156
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = -2
Query: 686 KVHLVGIDIFNGKKYEDICPS 624
K H VGIDIFNGKK EDI PS
Sbjct: 58 KCHFVGIDIFNGKKLEDIVPS 78
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = -3
Query: 742 PCKIVKMSPSKTGKARPPXKFTWLGLISSMVKSMKISVPPPHNMDVP 602
PCK+V++S SKTGK K ++G+ K ++ VP HN DVP
Sbjct: 40 PCKVVEVSTSKTGK-HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 85
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = -1
Query: 621 HTTWTYPHVKREDYQLTDISDDG-YLTLMADNGDLREDLKNPGW*PRAHSCVLTSTSGKE 445
H T H+ R +YQL DIS+DG +++L+ ++G+ ++DL P + GK+
Sbjct: 39 HPTTVMFHMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKD 98
Query: 444 LLCTVLKSCG 415
++ TV+ + G
Sbjct: 99 VVVTVMSAMG 108
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 742 PCKIVKMSPSKTGKARPPXKFTWLGLISSMVKSMKISVPPPHNMDVPPREARRL 581
P + + P TG RPP K + MV + +S PP H + +PP R L
Sbjct: 14 PLSLSSLLPPTTGLLRPPPKVAASFALRPMV-AAAVSPPPRHRLLLPPPPGRCL 66
>03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163
Length = 462
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 552 SHHPRYQSVGSLRASRGGTSMLCGGG 629
+++ R Q++GS RASRGG M CGGG
Sbjct: 338 NNYIRIQAMGSPRASRGG--MRCGGG 361
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 567 ISDDGYLTLMADNGDLREDLKNP 499
+ DDG + M NGD RE LK P
Sbjct: 92 VKDDGVINSMTRNGDRRELLKGP 114
>12_01_0034 -
288931-289201,289284-289398,289524-289639,289805-289939,
290062-290129,290374-290484
Length = 271
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 567 ISDDGYLTLMADNGDLREDLKNP 499
+ DDG + M NGD RE LK P
Sbjct: 89 VKDDGVINSMTRNGDPRELLKGP 111
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 510 GPHAGHRCQPSGSGSHHPRYQSVGSLRASRGGTSMLCGGGTD 635
GP +G P G G PR GS + RG + CG G D
Sbjct: 31 GPRSGGGGGPRGGGGGGPR--GSGSSKPRRGDGGLGCGRGDD 70
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 462 STSGKELLCTVLKSCGEECVIAVKANTALDK 370
S G+ L+ +L SC EE + V++ +LDK
Sbjct: 335 SLMGRSLISKILVSCSEEILTLVQSTGSLDK 365
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/64 (32%), Positives = 26/64 (40%)
Frame = +3
Query: 528 RCQPSGSGSHHPRYQSVGSLRASRGGTSMLCGGGTDIFILFTIEDINPNQVNFXGGRAFP 707
+ P S P S+ + +RGG GGG F F DI +V GG FP
Sbjct: 211 KISPGSSTFPPPLANSIFAAAPNRGGG----GGGAAPFAAFPAPDIVGRRVVSSGGFTFP 266
Query: 708 VLDG 719
V G
Sbjct: 267 VAVG 270
>07_01_0200 + 1433859-1434377
Length = 172
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 362 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 448
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0196 + 1400708-1401226
Length = 172
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 362 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 448
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0192 + 1367558-1368076
Length = 172
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 362 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 448
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>07_01_0188 + 1334405-1334923
Length = 172
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +2
Query: 362 LVYLSRAVFALTAMT---HSSPQDFSTVHNNS 448
LV L+ A A+ A T SSPQDF HN++
Sbjct: 8 LVLLAAATLAMAASTAAAQSSPQDFVDAHNDA 39
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 615 TWTYPHVKREDYQLTDISDDGYL-TLMADNGDLR 517
TW Y HV+R Y+L I L +L+ +NG +R
Sbjct: 532 TWHYVHVRRYWYELDHIVPTAELASLLEENGGVR 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,294,622
Number of Sequences: 37544
Number of extensions: 379797
Number of successful extensions: 1108
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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