Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1212
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    41   0.001
Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...    40   0.002
AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical ...    31   1.2  
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    30   2.0  
Z81510-6|CAB04161.3|  327|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh...    28   6.2  
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p...    28   6.2  

>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = -3

Query: 748 GXPCKIVKMSPSKTGKARPPXKFTWLGLISSMVKSMKISVPPPHNMDVP 602
           G PCKIV+MS SKTGK     K   + +     K ++   P  HNMDVP
Sbjct: 73  GRPCKIVEMSTSKTGK-HGHAKVHMVAIDIFTTKKLEDICPSTHNMDVP 120



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = -2

Query: 686 KVHLVGIDIFNGKKYEDICPSXTQHGRTPT*SAKTTN*LISRMMAT*P*WLTTVTCVRTS 507
           KVH+V IDIF  KK EDICPS T +   P    K    ++  +       +   +C    
Sbjct: 93  KVHMVAIDIFTTKKLEDICPS-THNMDVPV--VKRREYILMSIEDGFCSLMDPESCELKD 149

Query: 506 --KIPDGDLGHTV 474
             K+P+GDLG+T+
Sbjct: 150 DLKMPEGDLGNTI 162



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = -1

Query: 603 PHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKNP-GW*PRAHSCVLTSTSGKELLCTV 430
           P VKR +Y L  I +DG+ +LM  ++ +L++DLK P G         L    G  +L  V
Sbjct: 120 PVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIREALEKDEG-SVLVQV 177

Query: 429 LKSCGEECVIAVKANT 382
           + +CGEE ++  K +T
Sbjct: 178 VAACGEEAILGYKIST 193


>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = -3

Query: 748 GXPCKIVKMSPSKTGKARPPXKFTWLGLISSMVKSMKISVPPPHNMDVP 602
           G PCKIV+MS SKTGK     K   + +     K ++   P  HNMDVP
Sbjct: 39  GRPCKIVEMSTSKTGK-HGHAKVHMVAIDIFTSKKLEDICPSTHNMDVP 86



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -2

Query: 686 KVHLVGIDIFNGKKYEDICPS 624
           KVH+V IDIF  KK EDICPS
Sbjct: 59  KVHMVAIDIFTSKKLEDICPS 79



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -1

Query: 603 PHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKNPGW*PRAHSCVLTSTSGKELLCTVL 427
           P VKR +Y L  I DDGY +LM  ++ + ++DLK P                  +L  V+
Sbjct: 86  PVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIRDAYEKDEGSVLVQVV 144

Query: 426 KSCGEECVIAVKANT 382
            + GEE ++  K +T
Sbjct: 145 SAIGEEAILGWKVST 159


>AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK973.8 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 392 LTAMTHSSPQDFSTVHNNSLPLVEVSTQLCARGHHPGFLRSSRRSPLSAI 541
           +T + H  P  F+TVH  S  L+  S Q+   G  P FLR+    P   +
Sbjct: 24  ITEVNHMMPIHFATVHEYS--LINWSLQISEAGGIPRFLRNLEPEPRETV 71


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 540 SGSGSHHPRYQSVGSLRASRGGTSMLCGGGTDIF 641
           +G G+   R +S G  R +RGG     GGG D F
Sbjct: 242 NGGGNDRDRRESSGGFRDNRGGGGGFGGGGRDRF 275


>Z81510-6|CAB04161.3|  327|Caenorhabditis elegans Hypothetical
           protein F21D9.2 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +2

Query: 254 YYSFFKLNLYTILCFTFM*ELLIVKN*KFVNPINAELVYLSRAVFALTAMTHSSPQDFS- 430
           YY+   + LY I+ +  + EL I K   F +P   +++Y+    FAL    H SP  F  
Sbjct: 204 YYNIGAILLYFIVGYLTVAELSIEKASMF-SPRETKILYVLWGFFALL---HLSPNFFGL 259

Query: 431 --TVHNNSLPLVEVSTQLCA 484
             TV     P V  S Q CA
Sbjct: 260 YITVSWAFAPAVSFSGQCCA 279


>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
           protein F19H8.1 protein.
          Length = 1229

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 386 FALTAMTHSSPQDFSTVHNNSLPLVEVSTQLCARGHHPGF 505
           FA+ A+ +S PQDF  +H+  L LV +  Q   +    GF
Sbjct: 425 FAIDAVRNSRPQDFIWIHDYHLMLVGMIMQSLDQHLEVGF 464


>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1229

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 386 FALTAMTHSSPQDFSTVHNNSLPLVEVSTQLCARGHHPGF 505
           FA+ A+ +S PQDF  +H+  L LV +  Q   +    GF
Sbjct: 425 FAIDAVRNSRPQDFIWIHDYHLMLVGMIMQSLDQHLEVGF 464


>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1230

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 386 FALTAMTHSSPQDFSTVHNNSLPLVEVSTQLCARGHHPGF 505
           FA+ A+ +S PQDF  +H+  L LV +  Q   +    GF
Sbjct: 425 FAIDAVRNSRPQDFIWIHDYHLMLVGMIMQSLDQHLEVGF 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,211,628
Number of Sequences: 27780
Number of extensions: 309090
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)