Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1212
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.57 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   4.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.3  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 543 GSGSHHPRYQSVGSLRASRGGTSMLCGGGTDIFILFTIEDINP--NQVNF 686
           G GS  P   S  S  +S   TS+     T I  LF  +D+N   N++N+
Sbjct: 85  GGGSSSPSPSSPSSFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNY 134


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 665 DIFNGKKYEDIC 630
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 493 PSGIFEVLTQVTVVSHQGQVA 555
           P G  +   QV V++H GQ++
Sbjct: 334 PKGAADFTAQVIVLNHPGQIS 354


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 493 PSGIFEVLTQVTVVSHQGQVA 555
           P G  +   QV V++H GQ++
Sbjct: 334 PRGAADFTAQVIVLNHPGQIS 354


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 493 PSGIFEVLTQVTVVSHQGQVA 555
           P G  +   QV V++H GQ++
Sbjct: 45  PRGAADFTAQVIVLNHPGQIS 65


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 388 CFDGDDALLTAGFQHGAQQFLAA 456
           C D DD LL      G++   AA
Sbjct: 670 CLDDDDTLLEVALSLGSEALSAA 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,952
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)