Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1211
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 31 0.19
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 27 1.8
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 27 1.8
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 3.1
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 26 5.4
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 25 7.2
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 7.2
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 7.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 9.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Frame = -3
Query: 561 NPLKRLVRTEXASAAPDIAKPSESNLLTETKPEQPAAGPLKQIFENSPVXQGIAGAVKKI 382
N + R+++ ++ +P ++ PS+++ + +T K IF N+ +G + K
Sbjct: 149 NSVPRVLKKAPSTHSPQLSVPSKTSTIDKTDTRSTEKTKGKDIFSNARNQKGNSSRKNKK 208
Query: 381 QTTVNN----PVKPRDSEVVEETKSDQE 310
N+ P+ P++ ++ E+ K +++
Sbjct: 209 APLENHKEKEPLLPKEEKLSEQAKRERD 236
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +1
Query: 313 LIRFSLFNHFR----ISWLHWIIDCCLDLFNC 396
+I LFN R I WL W+I CC+ LF C
Sbjct: 222 VISIGLFNIRREMMIIIWLLWLIICCI-LFGC 252
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +1
Query: 313 LIRFSLFNHFR----ISWLHWIIDCCLDLFNC 396
+I LFN R I WL W+I CC+ LF C
Sbjct: 189 VISIGLFNIRREMMIIIWLLWLIICCI-LFGC 219
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 592 PNRPGAQSTEKPAEATSTNGARECRSRHCETIGVKSTY*NKTRTTR 455
PN P + T KP + + G CR R + K N T+T R
Sbjct: 17 PN-PNVEPTPKPTKRRTKTGCLTCRRRRIKCDETKPFCLNCTKTNR 61
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 512 SGAALAXSVRTSRFSGFLSRLSTRP 586
S AALA V +R SG+ R S RP
Sbjct: 56 SSAALAAGVGGTRASGYTHRFSIRP 80
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 LGFTGLLTVVWIFLTAPAMPCXTGL-FSKICFNGPAAGCSGFVSVSR 487
+G G+L + + + A+ T L S IC NG G + +VSR
Sbjct: 104 IGEAGVLKTLLMLFISYAVGIFTSLSISAICTNGMVRGGGAYYAVSR 150
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 474 TKPEQPAAGPLKQIFENSPVXQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSDQ 313
+KP A GPL ++S +A A + +T N P ++ E T Q
Sbjct: 323 SKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNTNGASPIQDQISEFTDQHQ 376
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 449 PAAGCSGFVSVSRFDSDG 502
PAAG GFV VS F+ G
Sbjct: 68 PAAGTRGFVPVSHFEEIG 85
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 568 TEKPAEATSTNGARECRSRHCETIGVKST 482
T P E T+T C SR ETI ST
Sbjct: 564 TTSPEETTTTMTTTTCSSRPEETISTVST 592
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = -3
Query: 522 AAPDIAK---PSESNLLTETKPEQ---PAAGPLKQIFENSPVXQGIAGAVKKIQTTVNNP 361
+AP + + P +S+ + P PA K I P + AGA +++ N+P
Sbjct: 624 SAPQVTRLMAPQDSSSVVTPSPTSLLDPARAVRKVIDGIDPPKEAGAGATADVESAANSP 683
Query: 360 VKP 352
+ P
Sbjct: 684 ITP 686
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,099
Number of Sequences: 5004
Number of extensions: 29289
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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